Gene Acel_0182 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcel_0182 
Symbol 
ID4485495 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidothermus cellulolyticus 11B 
KingdomBacteria 
Replicon accessionNC_008578 
Strand
Start bp194121 
End bp195044 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content61% 
IMG OID639728946 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_871943 
Protein GI117927392 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.677409 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0900351 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGACG GCGCATATCC AACGTTGCAG CGGATGCTGT TCTCCGTCGC CTACCGGATG 
CTCGGCAGTG TCGCCGAGGC GGAGGACATC GTACAAGAGG CGTTCGTGCG CTTTTACGCC
CTCGACGCCG ATCGTGTGCG CGACATTGAA TCCGTGCCCG CGTATCTGAC GGCTGTGGTC
ACCCGCCTGT CGATCGACTA TTTGCGCTCG GCCCGGGCGC GGCGGGAACA GTACGTTGGG
ACGTGGTTGC CGGAACCACT CGTCACCGAA CACTCCGTCG TGGACGGTGC GCGTTACGTC
GAACAACTTG ACTCGCTCTC CATTGCATTC CTTGTCGTCC TCGAGCGATT GAGTCCACTG
GAGCGTGCTG TTTTCCTGCT CCACGATATC TTTGACTACT CGTATCCAGA AATCTCCCGC
ATGATAGGGA AGAGCGCGAC GTATTGTCGC CAACTTGCGG TCCGAGCGCG CCGGCATGTC
CAGGCGTCGG GCCGAAGACG AACCAAGATA TCCCAGAATG AGCAGGAACG GTTGGCTCGT
CGATTCTTCG CCGCTGTTGG TGACGGCGAT GTCGCGGCGC TGGTCGACCT CCTCGTGATG
GACGCCGCTG CGTACGGCGA CGGTGGTGGA CAGGCACCCG CCGCTCGGAT ACCCATTTGC
GGGCGGGATC GGGTCGCCGC TTTTCTCGCA TCCCTTGGCC GAACAGCTCG CCGATTGGGT
GTCCGGTATC GCGTTACGGA AATCAATAGG CAACCCGGCG CGTTGTTCTT CAATCGCTCC
GGTCAGTTGC TGAGCGTCGC CATTCTCGAC ATCGGAGAAA ACGGTGTAGG CGCGGTGTAC
TCGATCGTCA ATCCTGACAA GCTCCAGCAC TTAGGCCCGG TTGGTGACGT ACGGGAGTTG
CTGCGCAAGG GGGTTCCGTC ATAG
 
Protein sequence
MADGAYPTLQ RMLFSVAYRM LGSVAEAEDI VQEAFVRFYA LDADRVRDIE SVPAYLTAVV 
TRLSIDYLRS ARARREQYVG TWLPEPLVTE HSVVDGARYV EQLDSLSIAF LVVLERLSPL
ERAVFLLHDI FDYSYPEISR MIGKSATYCR QLAVRARRHV QASGRRRTKI SQNEQERLAR
RFFAAVGDGD VAALVDLLVM DAAAYGDGGG QAPAARIPIC GRDRVAAFLA SLGRTARRLG
VRYRVTEINR QPGALFFNRS GQLLSVAILD IGENGVGAVY SIVNPDKLQH LGPVGDVREL
LRKGVPS