Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_4120 |
Symbol | |
ID | 4480334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 4944939 |
End bp | 4947389 |
Gene Length | 2451 bp |
Protein Length | 816 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639728735 |
Product | diguanylate phosphodiesterase |
Protein accession | YP_871743 |
Protein GI | 117922551 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTCGCA AACTCTCGCT CGCAGTATTG ATACCTGTCT GCATGCTGGC ACTTTATTTA GTGTTGGTTA CGGCTGAGTA TTTCTATGAG AGCGAGCTGG TACGTAATGA ACTGGCTGAT CGCCAAGTGA GCCAGATAAA GCAGCAACTT TTACGTATGC AAACGATAGT GCAGTCGGCG CAAGCGTTAC AAGATGTTGA ACGTATCGAG CAGGAAGTCT CTCTGGCTAC CTTAGATATG AATGTCATGG TTTATATCTT GCTGGATGCA AATAGTCGCA TTCGCTTTGC GAATCATACT GTTTGGCGTG ATAGCAATGC CATTGAAGTG ATTGATGGTT ACGATGTGGT CCGGCATCAT GCCGTGGTGC AATCTGGACA GGCGAGTGTT TCAATAAATC CAGACCGATT ATCGATTCAA GCCTATTATC CCGTCGATGC TCAATATCCT GGAGCGACAG AGCTTATCTA TCTTGAGTCT GATCTCGCGC CGTTAGTGGC TAAAGCTTCA ACCGAATTAC AACAACGATT TATGCGTGTA TGGGGGCTCG GAGCGCTGCT GTTAATCGGT TTCACCTTTG TTTTATATTA CCTCTTGATC CGTCCATTCA AGATGTTAAG CGAATCGGCA AAGCATGTAG GCACTCCCGA GTTTTCGACC CAAGTGCCTT GGAGTGCCTC CGAGGTCTTG TCTCTACAAA CGACACTGCA GCAGGTGCAT GAACATCTAG GGCGTGCAGT TAAGCAGCTT AACGATAGTG AGCAACGTTG GTTGTTTGCG GTTGAAGGTT CACGCAATGG GATCTGGGAT TGGAATATTC GTTCTGGCGA AGTGTTTCTT TCTGATCGTT GGAAGGAAAT GATTGGTTAT CAACCCGATG AGCTAGAGGA AGTGTTCCAG ACCTGGGAAA CGCGTTTGCA TCCTGATGAT AAGCAAGCCG TGTTGGACTG CCTGCAAGAG TATGTCAGCG GCAAGACTAA AGAATTTGAG AGTGTCCATC GCTTACAACA TAGAGATGGG CATTATGTTT GGGTATTTGA CCGTGGCATG TTAGTCGACT GGGATCACCT TGGTCGACCG ACTCGGATGA TCGGTATTCA TGTCGATGTC TCTGAGAGTG AGCGAAACCA TGCTGCGATT GCCGAATTAG TGAAGCAATC TGTGGCAGGG CCTAAGATGC TCCCCGAAAC CTTTATGGCG CAGTTATCCC AATACCTTAA TCAGCGAACC AGTGCGGGGT ATTGGGGGGC TTTGTTATTA CTCAATGTCG AAACCCTTGG AGCGAATGGC ACTCTTACAT CCCATGAGCT TGAGCGATTG TTGTCGCAAT TAAGTGCAAG GCTTTCAAGT TATTTTGCTG AAAATATTGT CGTTGCTCAT CTCGAATTGG GCCGGTTCGC CTTGTTAGCT AAGGAGTTGG CTGCCGATGC TAATATGGCC GGACGTCGAG CCTTGGCGTT GGCTACTGAG CTTAAACAAA TCGCCACTCG TCCCTTCCAT TATGGTGAAC ATGATTTTCG TTTAAATGCG AATATTGGGA TTTGCTTATT AGATTCTGTG GATACGTTGG CGTCAGAACT CGCCGTGCGA CGTGCCGAAC TGGCGATGCA GCATGCTCAG TCTAGTGAAC ACGCAGGTTG CGCTTTCTAT CACCCAGATT TAGAACGCTC GCAGGATCCT GAGTCGTCTT TATTGAACAG ATTAGAGCGT GCGATAGCTG AAAATCAGTT GTCGTTAATG TTCCAGCCAG TGGTGGATAT GCAAGGCAAG ATAGTGTCGG CCGAGGTTCT GTCTCGCTGG CATTTAGCGG ATGGGGAAAT TGTCCCGGTC GCTAAATTTA TTGATTTAGC CGAGCGCCAT GGCTTGATTG CATCGCTCGA TTTAAATGTG GCTACGCGCG TTTGCCAGTT GATTAAGCAA TTTAAACAGC AGGGTATTAA CCTGCCACGT TTAACTTTGA ATATTAGTAC CTTATCTTTC TGCCAGGCTG AATTTGTCGA GCAATTGGTT GCATTAACCC GTCGCTACGA GCTGGATGAC AATCAGCTGG GAATTGAGTT AACCGAGAGT GCATTACTAA CATCAGCCTC CTTTATTCTG CCGAGGATCA GTCTGCTCGC TGAGGCTGGG GTTGCGCTAA CATTAGATAA CTTTGGTGCG GGACAGGGCG CCTTGAGTTG CTTGCGTCAC TATCCCTTGC GTGAGGTGAA GCTCGATTTA CATTGTGCCG CCAATTTAAC GAATGATGCG AGCTGGAGCC AAGCGCTGAT TCAGTCGGTA CACCCCTTTA ACTTGCCTAT CGTGGCCAAA GGTGTCGAAT CACCGCAGCA ACAACAGCTA TTTAGCCGCT TAGGTTGTAC CCACTTCCAA GGCTACAATA TTGCTCGCGC CTTAAGTGTT AATGACTTTA AACAGCTTGT TTGTCCACGT CCCTTGTTGC GTAGCGTTTA A
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Protein sequence | MLRKLSLAVL IPVCMLALYL VLVTAEYFYE SELVRNELAD RQVSQIKQQL LRMQTIVQSA QALQDVERIE QEVSLATLDM NVMVYILLDA NSRIRFANHT VWRDSNAIEV IDGYDVVRHH AVVQSGQASV SINPDRLSIQ AYYPVDAQYP GATELIYLES DLAPLVAKAS TELQQRFMRV WGLGALLLIG FTFVLYYLLI RPFKMLSESA KHVGTPEFST QVPWSASEVL SLQTTLQQVH EHLGRAVKQL NDSEQRWLFA VEGSRNGIWD WNIRSGEVFL SDRWKEMIGY QPDELEEVFQ TWETRLHPDD KQAVLDCLQE YVSGKTKEFE SVHRLQHRDG HYVWVFDRGM LVDWDHLGRP TRMIGIHVDV SESERNHAAI AELVKQSVAG PKMLPETFMA QLSQYLNQRT SAGYWGALLL LNVETLGANG TLTSHELERL LSQLSARLSS YFAENIVVAH LELGRFALLA KELAADANMA GRRALALATE LKQIATRPFH YGEHDFRLNA NIGICLLDSV DTLASELAVR RAELAMQHAQ SSEHAGCAFY HPDLERSQDP ESSLLNRLER AIAENQLSLM FQPVVDMQGK IVSAEVLSRW HLADGEIVPV AKFIDLAERH GLIASLDLNV ATRVCQLIKQ FKQQGINLPR LTLNISTLSF CQAEFVEQLV ALTRRYELDD NQLGIELTES ALLTSASFIL PRISLLAEAG VALTLDNFGA GQGALSCLRH YPLREVKLDL HCAANLTNDA SWSQALIQSV HPFNLPIVAK GVESPQQQQL FSRLGCTHFQ GYNIARALSV NDFKQLVCPR PLLRSV
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