Gene Shewana3_4116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_4116 
Symbol 
ID4480330 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4939443 
End bp4940783 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content46% 
IMG OID639728731 
Productcoproporphyrinogen III oxidase 
Protein accessionYP_871739 
Protein GI117922547 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00538] oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAAA AATATAACTA CAGCGGTCCC CGTTACACCT CTTACCCAAC GGCGCTGGAG 
TTCGATGATT CATTCACTGA ACAAAACCTG TTAACGGCGA TTGAAAACAG TAAGAGTGAC
AAACTGTCGC TGTATATTCA CATCCCCTTC TGCGCCAAAC TTTGCTACTA CTGTGGCTGT
AATAAAGTTA TCACTCGCCA CGCCCACAAG GCCGATCAAT ATATCGAGTA TTTAAGCCAC
GAAATTATTA AGCGCGCTCC GCTGTTTAAG CACTACACAG TCACCCAAAT GCACTGGGGC
GGCGGCACTC CAACCTTCTT AAATCCTGAG CAAATTCTGA AGTTAACCGA CTTAATTAAG
GCTAACTTTA ACTTTGCCGC TGAAGGTGAG TTCTCTATCG AAGTTGACCC GCGTGAGATT
GAGCTTTCAA TGCTCGATAC CTTAAAAGAA GCGGGCTTTA ACCGCATTTC TATCGGCGTA
CAGGACTTCA ATAAAGAAGT ACAAGTCGCG GTAAACCGTG AGCAGGACGA GCAATTTATT
TTCGATTTAA TGGCCAAAGC CAAGGCCATG GGATTTGTCT CAACCAATAT CGACTTAATT
TACGGTCTGC CACATCAGAC ACCCGAAACA TTCGCCGCCA CCATGCAACG CGTGTTAGAC
CTGTCGCCCG ATCGTCTATC TGTGTTCAAC TATGCCCACT TACCCGCGCG TTTTGCCGCG
CAGCGTAAGA TTAAAGATGA ACATTTACCT TCGCCAAAAC AAAAACTCGA GATGTTGCAT
CAAACAATCG AGACTTTAAC TGGCGCGGGT TATCAGTACA TCGGCATGGA CCACTTCGCT
AAGCCCGATG ATGAGTTGGC TAAGTTACAA CGCGAAGGCA AACTGCACCG CAACTTCCAG
GGTTATACCA CCCAAGAAGA ATGCGACCTG CTTGGTCTTG GCGTGTCTTC TATCAGCCAA
ATCGGCGATT GTTATGCGCA AAACCAGAAG GACATTCGTC CTTACTACGA AGCCATCGAC
AAAGACGGAC ATGCACTGTG GAAAGGCTGT AGCCTGAATC GTGACGACGA AATTCGCCGT
GTCGTGATCA AACAACTGAT CTGCCACTTC GATTTAGATA TGGCAAAAAT GGACGAAAAA
CTAGGTATTA AGTTTGAGGA ATACTTCGCC GAAGACTTAA AACTGCTGCA AACCTTTATC
GACGATAAGT TAGTCGACGT AACCGACAGA AAGATCACTA TCAGCCCCAC TGGCCGTCTG
TTGATCCGCA ATATCTGTAT GTGCTTCGAC CTTTACTACC GTCAAAAAGC GCGTCAACAA
CAGTTCTCCC GTGTGATCTA A
 
Protein sequence
MIEKYNYSGP RYTSYPTALE FDDSFTEQNL LTAIENSKSD KLSLYIHIPF CAKLCYYCGC 
NKVITRHAHK ADQYIEYLSH EIIKRAPLFK HYTVTQMHWG GGTPTFLNPE QILKLTDLIK
ANFNFAAEGE FSIEVDPREI ELSMLDTLKE AGFNRISIGV QDFNKEVQVA VNREQDEQFI
FDLMAKAKAM GFVSTNIDLI YGLPHQTPET FAATMQRVLD LSPDRLSVFN YAHLPARFAA
QRKIKDEHLP SPKQKLEMLH QTIETLTGAG YQYIGMDHFA KPDDELAKLQ REGKLHRNFQ
GYTTQEECDL LGLGVSSISQ IGDCYAQNQK DIRPYYEAID KDGHALWKGC SLNRDDEIRR
VVIKQLICHF DLDMAKMDEK LGIKFEEYFA EDLKLLQTFI DDKLVDVTDR KITISPTGRL
LIRNICMCFD LYYRQKARQQ QFSRVI