| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4059 |
|---|
| Symbol | |
|---|
| ID | 4480273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4878341 |
|---|
| End bp | 4879873 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639728674 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_871682 |
|---|
| Protein GI | 117922490 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAATG ACCAGAGCTT GATGAGAAAG TCACATTTCC TAGGAACAAA AATACGTAAC
CTACGGAAAC GTAACAATTT AACCATGGAA GATTTATCGG CACGTTGCAT CCGCGTCGAT
GCGGGCAGTG CGCCCTCTGT GTCATATTTG TCGATGATCG AGCGTGGAAA ACGCGTACCC
AGTGCTGAAA TGTTGGCCGT GATTGCCACG GTTTTTCAAA AGGACGTTGA CTGGTTTTTA
GATGACGTGC CCGAGGAAAG TGCCATCACG CCGGACAAAG GCCGTCGTGG TGGGATTAGC
GGCATGGCGC TCGAACCCAG CTTTTTGTTT TCAAATGATA TTTTGCAAAT AGCCATCCCT
GAAATGCTAT CCCAGACGGG GATTTCGGGT CGACAATTCG CCCACTTATT AATCCGCGCC
CATCAGGAAC ATCATCAAAA CCATTTCCCC GATCTTGAAC GTGCCGCCGA AGAGGTTGGG
TTAAAACGTA TACCCTTATC CCTCGAGGAG ATGCTGGATA TTGCCAAGGG CGTAGGCTTA
AAAATCAAAT GGATAGATAG TACGCCCCAG GAAGTGATCG ACGAGCGCGG CGTAAGCTCG
CATCAGTTAG TGACTTCTTT CTTCGAGCCG CCCAGCACCA TTTACATCAA TAAAGTCCTT
AAACATCGCC CCAGTCGACT GAAGTACGAT CTCGCCGCCC ATATCGGCCA TTGTGTGTTG
CACAACAAGG ATGGGCTTAA GAGTGTGATG ATTTCTGGCC GAAAACTTGA GATGGACGAA
GAAGTGACGA TGCAGTCTAA TACCCTGAAC GCGCAGGATA TTTTGCATGC GTGGCGCGAC
TTTGAGTCCA GCTTTTTTGC CGGAGCCCTG TTATGTCCTA AGGTGCCGTA TCGACAATTG
CTCGACCGCC ACGGTTACGA AATTGAGGTG CATAAACAGC TACAAGTGTC GGCCTCGGTC
GCCATGCGGC GGATGACGGT CGTATCGCCT TATCCCCATT GGCATTATTT TGATGCCTAT
GCGCCGGGCA AACTCAAGGC CGTATACCGT GGCAATGGCA TTCCCCTGCC TTGGGGCAAT
ATGCGGCTGG TGGAAGACCC TTGTCAGCAC TGGGCGGTGT TTAGAATGAT CAGCGAGCCC
AAGGTCGGCA CCTCGGCGCA AATTTCGATT TTAAATGTGG GCAATGAACC ACGGATTTAC
TGCTGCGAGT CGATTAAAGT CGAAGACTCG GCGGGCAACC CCCATGTGCT CTGTGCCGGT
ATCGATTTGA ATCCGGCCAT CGAAGCCCAA GGCAAAGATG CACTCTCTAT CGCCCATGAT
TTAAAAGCCG CCTGTGTCTC TGGCGGCGGC TCAGTCGCGA TTCCCAAGCA TATTAAAAGT
GATCTAGTAA GCGTGGCTAA GATATTGAAT ATCAACTGGA TTGAACGCGG TATTAAAAAT
GATGCCCGGC TTATCTGCTC TCGCGGCGCC GTCTGCCCAC GGCAACCCAG CTGTTATCAA
GCGGGTAAAT CCCAGTGTGG TGGGGTGGAG TAA
|
|---|
| Protein sequence | MRNDQSLMRK SHFLGTKIRN LRKRNNLTME DLSARCIRVD AGSAPSVSYL SMIERGKRVP
SAEMLAVIAT VFQKDVDWFL DDVPEESAIT PDKGRRGGIS GMALEPSFLF SNDILQIAIP
EMLSQTGISG RQFAHLLIRA HQEHHQNHFP DLERAAEEVG LKRIPLSLEE MLDIAKGVGL
KIKWIDSTPQ EVIDERGVSS HQLVTSFFEP PSTIYINKVL KHRPSRLKYD LAAHIGHCVL
HNKDGLKSVM ISGRKLEMDE EVTMQSNTLN AQDILHAWRD FESSFFAGAL LCPKVPYRQL
LDRHGYEIEV HKQLQVSASV AMRRMTVVSP YPHWHYFDAY APGKLKAVYR GNGIPLPWGN
MRLVEDPCQH WAVFRMISEP KVGTSAQISI LNVGNEPRIY CCESIKVEDS AGNPHVLCAG
IDLNPAIEAQ GKDALSIAHD LKAACVSGGG SVAIPKHIKS DLVSVAKILN INWIERGIKN
DARLICSRGA VCPRQPSCYQ AGKSQCGGVE
|
|---|
| |