| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4045 |
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| Symbol | |
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| ID | 4480259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 4858264 |
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| End bp | 4861398 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639728660 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_871668 |
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| Protein GI | 117922476 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGTT TTTTTATTGA TCGCCCCATC TTTGCGTGGG TGATCGCCTT AATCATTATG
TTGGCGGGGG TTCTATCGAT CCGATCCCTG CCAGTCTCGC AGTACCCCAG TATTGCGCCA
CCGACAGTGG TGATCAGTGC GAACTACCCA GGTGCATCTG CCAAAATCGT TGAAGACTCA
GTGACTCAGG TGATTGAGCA ACGTATGAAG GGTATCGACC ACCTACGTTA TATCGCATCG
ACCAGTGATA GCTTTGGTAA CGCGTCTATT ACCTTAACCT TTAACGCGGA AGCCGATCCG
GATATCGCGC AGGTTCAGGT ACAGAACAAG TTACAGGGCG CTATGACTCT GTTACCACAA
GAGGTGCAAT CTCAAGGGGT TAACGTTAAC AAGTCAAGCT CAGGCTTCCT GATGGTACTG
GGCTTCGTCT CGACCGACGG TTCTTTAGAT AAGGGTGACA TCGCCGACTA TGTGGGCGCT
AACATCCAAG ATCCTATGAG CCGTGTACCT GGCGTGGGCG AAATTCAGAT TTTCGGTGCT
CAATACGCGA TGCGTATATG GTTAGATCCA TTGAAGCTGA CCCAATACAA TCTCACCAGC
TTAGATGTGG TGAGCGCTAT CCGTGCGCAA AACGCGCAGG TATCAGCGGG TCAACTCGGT
GGTACGCCAT CACTGCCAGG GCAAGAGTTA AACGCGACTG TATCGGCACA GAGCCGTCTG
CAAACGCCAG AACAATTCCG CAAGATCATC ATCAAATCCG ATACTTCGGG TGCGAACGTG
TTCTTGGGTG ATGTGGCGCG TGTTGAACTA GGTTCTGAAA GCTATGCGGT AGAGTCTCTA
TATAACGGCA AACCCGCTTC TGGTATTGCG ATTAAGTTGG CTACTGGTGC TAACGCCTTA
GACACGGCAG AAGCCGTTCG CGCTAAAGTT GAAGAGTTAC GTCCCTTCTT CCCTGCTGGG
TTAGATGTGG TTTACCCCTA CGATACAACG CCATTCGTTG AGAAATCGAT TGAAGGCGTA
GTACACACTC TGCTTGAAGC TATCGTACTG GTGTTCGTCA TCATGTACCT CTTCCTGCAA
AACTTCCGCG CGACGCTGAT TCCAACCATC GCAGTACCTG TCGTATTGCT GGGAACCTTT
GCGATTCTGT CGGCAACGGG CTTCTCCATC AACACCCTCA CCATGTTCGC TATGGTGCTG
GCAATTGGTC TGCTCGTGGA CGACGCGATT GTGGTGGTGG AAAACGTTGA GCGGGTAATG
GCTGAAGAGG GCTTAAGCCC ACTCGAGGCG ACCCGTAAGT CGATGGATCA AATTACTGGC
GCGTTAGTCG GTATCGGTCT GACCTTGTCA GCGGTATTCG TACCTATGGC GTTTATGTCG
GGTTCAACCG GGGTAATTTA CCGTCAGTTC TCGATCACTA TCGTGTCTGC GATGGCGCTG
TCTGTGCTGG TAGCCTTGAT TTTAACGCCT GCACTCTGTG CGACCATGTT AAAACCTTTG
AAGAAGGGCC ATGGCCATAT CGAAACCGGT TTCTTCGGCT GGTTTAACCG TGGCTTCGAT
CGCTTAACGA ACCGTTATGA ATCGAGCGTG GCTGGTATTA TAAAACGTAG CTTCAGAGTC
ATGATGATTT ACGCTGCATT AGTTGTGGCA GTGGGCTGGA TCTTCATGCG CATGCCAACG
GCATTCTTAC CCGACGAAGA CCAAGGTATC TTGTTCACGC AGGCGATTTT GCCAACTAAC
TCAACCCAAG AAAGTACGCT TAAAGTGTTG GAGAAAGTCT CTGATCACTA TCTGGCAGAA
GAGGGCGTGA GATCGGTGTT CAGCGTGGCG GGCTTCAGTT TCGCGGGTCA AGGCCAGAAC
ATGGGTATTG CCTTCGTTGG CTTGAAGGAT TGGTCAGAGC GTGAAGCGCC AGGTATGGAT
GTGCAATCTA TTGCGGGCCG CGCGATGGGC GTATTCAGTC AAATGAAAGA AGCCTTCGTA
TTCGCCTTCG TACCGCCTGC GGTAATCGAG CTGGGTACGG CTAACGGTTT CGACATGTAC
CTGCAAGATA AGAATGGCCA AGGGCACGAC AAGTTAGTCG CAGCGCGTAA CCAATTGTTG
GGTATGGCGG CACAGAATCC AAACCTCGTG GGCGTTCGTC CAAACGGTCA GGAAGATGCG
CCAATCTATC AGTTGCATAT CGACCATGCC AAACTGAGTG CCTTAGGCAT TGAGATTGCG
AACGTGAACA GTGTACTCGC AACCGCATGG GGTGGCTCTT ATGTAAACGA CTTTATCGAC
CGTGGTCGTG TGAAGAAGGT TTACGTACAG GGTGATGCAC AATACCGTAT GCAACCTGAA
GACTTAGACA CTTGGTACGT GCGTAACAAC AAGGGCGACA TGGTGCCATT CTCGGCCTTC
GCAACGGGCG CATGGGAATA TGGTTCACCT CGTCTAGAAC GCTTCAACGG TTTACCTGCC
ATGAACATTC AAGGCGCAAC GGCTCCTGGT TTCAGTACCG GTGCGGCGAT GAATATCATG
GAAGACATGG TGAAGCAGTT ACCACCTGGC TTTGGTATCG AGTGGAACGG CTTATCCTAT
GAGGAACGTT TATCCGGTAA CCAAGCGCCA GCGCTGTATG CTCTGTCGAT TCTGGTGGTA
TTCCTCGTAC TGGCAGCACT TTATGAGAGC TGGTCTGTAC CGTTCGCAGT AATCCTAGTG
GTTCCGCTCG GTATTATCGG TGCCCTGCTG GCGATGAATG GTCGTGGCTT GCCAAACGAC
GTGTTCTTCC AGGTGGGTCT GTTGACGACG GTCGGTTTGG CGACGAAGAA CGCCATCTTG
ATTGTGGAAT TCGCCAAAGA GTTCTATGAA AAAGGTGCGG GTCTTATTGA GGCGACCTTA
CATGCGGTCC GCGTGCGTTT GCGTCCAATT CTGATGACGT CACTCGCCTT CGGTCTGGGT
GTTGTACCGT TAGCGATTAG TACGGGTGTA GGTTCTGGTA GCCAGAACGC CATCGGTACT
GGGGTACTCG GCGGTATGAT GAGTTCGACC TTCCTAGGTA TCTTCTTCGT GCCGTTGTTC
TTCGTGATTG TGGAACGTAT CTTTAGTAAG CGCGAGAAGA AAGGTAAAGA AGAAAAGCCG
ACCTCGGCGG AGTAA
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| Protein sequence | MARFFIDRPI FAWVIALIIM LAGVLSIRSL PVSQYPSIAP PTVVISANYP GASAKIVEDS
VTQVIEQRMK GIDHLRYIAS TSDSFGNASI TLTFNAEADP DIAQVQVQNK LQGAMTLLPQ
EVQSQGVNVN KSSSGFLMVL GFVSTDGSLD KGDIADYVGA NIQDPMSRVP GVGEIQIFGA
QYAMRIWLDP LKLTQYNLTS LDVVSAIRAQ NAQVSAGQLG GTPSLPGQEL NATVSAQSRL
QTPEQFRKII IKSDTSGANV FLGDVARVEL GSESYAVESL YNGKPASGIA IKLATGANAL
DTAEAVRAKV EELRPFFPAG LDVVYPYDTT PFVEKSIEGV VHTLLEAIVL VFVIMYLFLQ
NFRATLIPTI AVPVVLLGTF AILSATGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
AEEGLSPLEA TRKSMDQITG ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SITIVSAMAL
SVLVALILTP ALCATMLKPL KKGHGHIETG FFGWFNRGFD RLTNRYESSV AGIIKRSFRV
MMIYAALVVA VGWIFMRMPT AFLPDEDQGI LFTQAILPTN STQESTLKVL EKVSDHYLAE
EGVRSVFSVA GFSFAGQGQN MGIAFVGLKD WSEREAPGMD VQSIAGRAMG VFSQMKEAFV
FAFVPPAVIE LGTANGFDMY LQDKNGQGHD KLVAARNQLL GMAAQNPNLV GVRPNGQEDA
PIYQLHIDHA KLSALGIEIA NVNSVLATAW GGSYVNDFID RGRVKKVYVQ GDAQYRMQPE
DLDTWYVRNN KGDMVPFSAF ATGAWEYGSP RLERFNGLPA MNIQGATAPG FSTGAAMNIM
EDMVKQLPPG FGIEWNGLSY EERLSGNQAP ALYALSILVV FLVLAALYES WSVPFAVILV
VPLGIIGALL AMNGRGLPND VFFQVGLLTT VGLATKNAIL IVEFAKEFYE KGAGLIEATL
HAVRVRLRPI LMTSLAFGLG VVPLAISTGV GSGSQNAIGT GVLGGMMSST FLGIFFVPLF
FVIVERIFSK REKKGKEEKP TSAE
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