| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4032 |
|---|
| Symbol | |
|---|
| ID | 4480246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4845079 |
|---|
| End bp | 4847058 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639728647 |
|---|
| Product | cytochrome c oxidase, subunit I |
|---|
| Protein accession | YP_871655 |
|---|
| Protein GI | 117922463 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02843] cytochrome o ubiquinol oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTC TCGGTAAATT AAGCTTAGAT GCGATCCCGT ATCATGAGCC TATCATCATG
GTGACCCTTG CGGTTGTTGC CGTGATAGGC CTGTACGTCG CAGCCTTGAT CACTAAACAC
AAAAAATGGG GCGTGCTTTG GCACGACTGG TTAACCTCGG TTGACCATAA ACGCCTCGGT
ATCATGTACA TAGTGCTTGC CTTCATCATG TTGATCCGCG GTTTCTCCGA CGCCATCATG
ATGCGTACCC AACAGGCACT GGCCACCAAT GGCGCCGCAG GTTATCTGCC GCCTGAACAT
TACGACCAAA TCTTCACTGC CCACGGCGTG ATCATGATTA TCTTTATGGC GATGCCATTT
ATGATCGGTC TAATGAACTT AGTGCTGCCA CTACAAATCG GTGCCCGCGA CGTTGCCTTC
CCCTTCTTGA ACAACCTCAG CTTCTGGTTA ACCGCGTCTG GTGCCGTGCT GATCAATATT
TCATTAGGTT TAGGTGAATT CGCCCGTACC GGTTGGGTGG CTTACCCGCC TTTATCTGAG
CTGGCTTACA GTCCGGGCGT TGGGGTCGAT TACTATATCT GGGCACTACA GATTTCGGGG
ATAGGGACAA CCTTAACCGG GGTCAACTTT ATCGCGACTG TGCTTAAGAT GCGCGCTCCA
GGCATGAAGT TGATGCAAAT GCCAATCTTC ACTTGGACTT GTACTTGGGC CAACATCCTG
ATCGTGGCTT CGTTCCCGAT CCTGACCGCG GTTTTAGCAC TGTTAACACT CGATCGTTAC
ATGGATTTCC ACTTCTTCAC CAATGATGGT GGTGGTAACG CCATGATGTA TATCAACCTG
TTCTGGGCTT GGGGTCACCC TGAAGTGTAC ATCCTGATTT TACCTGCGTT CGGTATCTTC
TCAGACGTAA TTTCAACCTT TACCTCTAAG CGTCTGTTCG GCTATTCCTC CATGGTATGG
GCCAGCGGCG CGATTTCGAT CCTCGGCTTC ATCGTGTGGT TACACCACTT CTTTACCATG
GGCTCGAGCG CCAACGTCAA CGCCTTCTTC GGCGTGATGA CCATGGTGAT TGCGGTCCCG
ACAGGGGTAA AACTGTTTAA CTGGTTGTTC ACTATTTACC GCGGCCGCCT GCGCTTAACT
GTGCCAGTGC TGTGGACCTT AGGCTTTATG GTGACTTTCA CCATTGGTGG TATGACGGGC
GTGTTATTGG CCGTACCTGG AGCCGACTAC GTACTGCACA ACAGCTTGTT CCTGATCGCT
CACTTCCATA ACACCATTAT CGGTGGTGCC GTGTTCGGTT ACTTAGCCGG TTTTGCTTAC
TGGTTCCCGA AAGCGACGGG TTTCCACTTA AATGAGCGTT TAGGTAAAGC CTCATTCTGG
TGCTGGCAGA TTGGTTTCTA TGTGGCCTTT ATGCCGCTGT ATGTACTCGG TTTTATGGGT
ATGACTCGCC GTATCAACCA CATTGATAAC CCAGCATGGA ACATGTGGAT CTATATCGCT
GCCGTGGGTG CTTGCATCAT CATGGTCGGT ATCATTCTGC AATTCGTACA ACTGTACGTG
AGTATCCGTG ACCGCGACCA AAACCGTGAC ACCACGGGCG ACCCATGGAA TGGCCACACA
CTGGAATGGT CAACCGCCTC ACCACCACAG TTCTACAACT TTGCTAAGTT GCCACAAGTG
TCTGATATCG ATGCCTTTAC CGATGCCAAA GAGAAAGGCA CTGCGTATCA ACGCCTCAAA
CACTATCAGC CAATCCATAT GCCGAAAAAT ACTCCGAGCG GTATCTTAAT GGCACTGGGT
ATTACTGCCG CTGGTTTTGC TGCGATTTGG CACATTCTGT GGCTCGCGAT TGTGGGCATG
GTGGGCGCGT TTATCGTGTT CTTATTCCGT GCTTATAACA ACGATGTCGA CTATTACGTT
CAACCCGATG AAGTGGCACG CATTGAAAAT GCTCACTTAA ACAATGTAGT AAGGGGCTGA
|
|---|
| Protein sequence | MSFLGKLSLD AIPYHEPIIM VTLAVVAVIG LYVAALITKH KKWGVLWHDW LTSVDHKRLG
IMYIVLAFIM LIRGFSDAIM MRTQQALATN GAAGYLPPEH YDQIFTAHGV IMIIFMAMPF
MIGLMNLVLP LQIGARDVAF PFLNNLSFWL TASGAVLINI SLGLGEFART GWVAYPPLSE
LAYSPGVGVD YYIWALQISG IGTTLTGVNF IATVLKMRAP GMKLMQMPIF TWTCTWANIL
IVASFPILTA VLALLTLDRY MDFHFFTNDG GGNAMMYINL FWAWGHPEVY ILILPAFGIF
SDVISTFTSK RLFGYSSMVW ASGAISILGF IVWLHHFFTM GSSANVNAFF GVMTMVIAVP
TGVKLFNWLF TIYRGRLRLT VPVLWTLGFM VTFTIGGMTG VLLAVPGADY VLHNSLFLIA
HFHNTIIGGA VFGYLAGFAY WFPKATGFHL NERLGKASFW CWQIGFYVAF MPLYVLGFMG
MTRRINHIDN PAWNMWIYIA AVGACIIMVG IILQFVQLYV SIRDRDQNRD TTGDPWNGHT
LEWSTASPPQ FYNFAKLPQV SDIDAFTDAK EKGTAYQRLK HYQPIHMPKN TPSGILMALG
ITAAGFAAIW HILWLAIVGM VGAFIVFLFR AYNNDVDYYV QPDEVARIEN AHLNNVVRG
|
|---|
| |