| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4029 |
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| Symbol | |
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| ID | 4480243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 4839264 |
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| End bp | 4842950 |
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| Gene Length | 3687 bp |
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| Protein Length | 1228 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639728644 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_871652 |
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| Protein GI | 117922460 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGGATTA AGGCATTATG GTGCCTGTCA GAGTTCCGGC TTAGTAATAA AAAGGGATTG
TATATCAAAG CATTTGCTCA TTATCTTAAG GTCAATATCC TCGTTGCCTT GGCTTATTTT
GTCGTTGGCA AAATAGGCTT GTTGATTGCC CTACCGCCAG GTTACTCGGC CGCCATCTGG
CCCGCGGCGG GGATTGCCAT CGCCTCCTGC ATTATGTGGC GCCAATATGC CCCTTGGTTT
GGGGTGCTGC TTGGGTCTTG GCTGATTAAT ATCAATATCG GCGGAGCGCT TCACTTAGGT
TGGCTGCCCA TAGCCATTGC CTCTGCTTCG AGCTTACAAG CCTATGTTTC GGCCAAGGTG
ATCCGTCGTA TCGACCCTGT TTTTACCTTA GATAAACCCA ACACAGTGAT TAAATCCTGC
CTCAGCCTCG CGCTGACCTG CATGATTGCC ACGCTGTTTG CGAATGCAGC CTTGGTAGTT
CACGGCACCA TTCCGCTCAA GGATGCCTTG GGTAGTACGG TTAATTGGTG GATTGGTGAT
TTACTCGGGG CGGTGATCTT TATTCCGCTC ACTATGTTGA TCTTCGATCA GCGCTCAATT
TGGCGCTCGA GGCGTGTTCA GACAGGACTG CCGCTGTTGG TTGGTTTTTT ATTCTGCGTC
GGGATTTATT ACTACTCGGA TATGAACCAG CGGCAACAAC TGCAAGATAA GTTTCAAATC
CAATCCAATG CCATTATCAG CAGTGTGGAG AGTTTCCAAG AGTCTAACTT ACAGCAAGTG
ATTGCCTTGG CCAGCCTGTT CGATAATAGC GAACAAGTGT CCGAGGACGA GTTTATTCAG
TTTGGGAAGC GTAACCAACT GCAACTCGAT GGTTTTCGGG CCTGGGCTTG GTCGCCACTG
ATTGCCGCGA GCGATAAAGA CAGTTTCGAG ACCGAGACCA GTACCGAGCT CGGTGAGCCC
TATAAGATTA GATATTTAGA AGGCGGTGCA CCGAATGCCG ACGGTTGGCT GGTGCCCGTT
AAGTTTGTAC AACCTATGAA TACTAGCCGC GCCGCACTCG GGCTAGACAT CAATGGCGAG
CCCTCAAGGG CGGCGGCGAT AGCAAAAGTG CGCGCGACCC TATCACCTGT GATGACGGGT
AAAATCCAGC TGGCGGAAGA TCCTAATGGC CCAGGTGGTA CTCTGTTCCT CGCGCCCGTA
TTCGACCGCT TAGGCAATAT AGTCGGCTTT TGTTCGGCGG TGATCGATCT CCAGTCGATT
ATCAATGAGG TCGAGCAGGT CAAAGGCTTG CATTGGCGCC TGACGGACAT GAGCGCCAAG
GGCGCCTTGC TTTACGCCAA TAGCCAGAAG ACGTTTCCTG ATTTTGAAGG CAATATCCAT
AGCGACAAGA TGGGCCAGTA CTTTCAGGCG AACCTTATGC TGGCCGACAG GCACTGGCAT
ATAGTGATCT ATGAATCCTA TTCCTCCTTG ATGGGGGATA CTTTTAGCCT GTCGCTGCTG
ATGTTACTGC TCGCCTTTAT TACCTGCGCC GTAGTTGGCG GTATGACCTT GGTTTCATCG
GGAGAGCGAC ACCGCATCGC CGAAAAGGTC GCGGAAAAAA CCATGGCCCT CTCGAAGGAA
ATTGCCCGCA GCCAGACCTT CCAAGCCACC TTGATGGAGA GTGAGCAAAG GTATCGCACC
TTATTCGATA AGGCGCCCGT GGGGCACGCC TTAAAACGGC TAGAGGACGG GCAGTTTGTC
GCCATCAATC AAGCCTTTAT GGAGATAACC GGCTACACCC TCGAAGAGTT GCAAGCCATT
GACCCATGGG AACTCACCCC CATTCGTTAT CAATCGAGTG AGACCGAGCA GCTCGAACGT
CTCAAGCAAA CCCGTCGCTA TGGCCCCTAT CAGAAGCATT ATCGCCATAA AGATGGTCAG
CTAGTGGCCG TGAGGTTGAA TGGCTCCCTG GTCACCGCTG CCAATGGTGA ACAGCTGATC
CTGTTTATTG TCGAAGACAT TACCGAGCAG GAACGCACAG TTGCTCGGGT TAACCTACTG
GCTCAGGTGT TCCAGCAAAG TGGTGAAGGC ATCACCATCA TGGACGCCAA TGACATCATA
GTGGATGTGA ACAGCGCCTT TACTCAGATC ACTGGCTACT CAAGGGACGA GATTATCGGT
AAAAATTGCC GTTTCCTCGA GGCCGAGCGC ACCGACCGTA GTATCGATGC ACAGGTGCGC
GCCGCCCTCG AACAGACCGG ATTCTGGCAG GGGGAAGTGT GGGACAGACA CAAAGAGGGT
TTTGATTTCC CGAAATGGTT AATGATGTCG ATAGTGCGGG ATGAGACGGG CGCGATCAGC
CATTACATCG GCAGTTTTAC CGATATCAGC GAGCGTAAGG TGAATGAGGA GCGTATCCAC
TTTTTAGCTC ACCACGATTC GCTAACCTTG CTGCCGAATC GTTTGAGCCT GCAATCGCGT
CTGGAGAAGG TCTTTCAAGA GGCGTTTATC TCCCAAACTC AGATTGCCGT GATGTTTATC
GATATGGATC ATTTCAAAAA TATCAACGAC ACCTTGGGCC ACCATGTCGG TGATATGTTG
TTGCTCGAAG TGGCGCGGCG CTTAAAAAAC ATTATGGGTA ATGACGATAT CGTCGCGCGT
CTCGGCGGCG ATGAGTTTGT GGTGGTGTTG TCCGATACGG ATCACGATAG GGTCGCTAAG
GTGGCAGAAG CGCTACGTAG TGGTTTGAAT CAAACCTATC TCATTGATAA TAAGCCGTTA
CACTCATCGC CGAGTATTGG TATCAGCCTG TTCCCAACCG ATGGTGACAG TGTTGAAGCG
CTTATGAAAA ATGCCGATAT GGCCATGTAT CGTGCTAAGG CGGCGGGACG TAACAACTAC
CAGTTTTTCA CCGCTGCGAT GAACACCTTA GTGACTGAGC GCCAGCAAAT CGAAACAGGG
TTAAGGCAGG CGATCGCCTG TAATGAGTTG CTCCTATATT ACCAACCGCA GGTGGATATT
AGTTCCGGGC AAGTGGTTGG GGTCGAGGCG TTGATCCGCT GGCAACATCC GGAATTAGGG
TTAGTCGCGC CCGATCGTTT TATCCCGATC GCCGAAGAAA TTGACATGAT TATCCCTATC
GGCCAATGGG TATTAGAAAA CGCGTTAGCA CAGCTGGCCG AATGGCGTGA CAAGGGCGCT
AAAGGATTGC GGATGGCGGT TAATCTCTCG GCGCATCAAT TACGTAAAGA CACTATAGTT
GCGGATATTA TCAACGTGCT GACCAAGCAT AAGTTGGGTA AGGGGGCGCT CGAGCTTGAA
ATTACCGAGA GTGTCGCCAT GCAGTATCCC GAGCAAAATG CCAAGTTACT GGCCGAGTTG
CGCCAGCATG GCATCGAATT GGCCATCGAT GACTTTGGGA CGGGTTATTC ATCACTCTCT
TACTTGAAGT TATTGCCATT AGACAGGCTC AAGTTAGACC GATCCTTTGT GAAGGATATT
GAGAGCGATC CGAACGATGC CGCCATCAGC GCGGCGACGA TTTCAATGGC ACATGAGTTG
GGGCTGACCG TAGTGGCCGA AGGGGTCGAG AATGAGGCGC AACTGGTGCT GTTATCGGGC
ATGGGCTGCG ATTTAGTACA GGGATATTAT TTTAGTAAAC CACTGGCTGC CGATGACTGT
TTCCGCTTTA TCGAGCGCAA TTTTTAA
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| Protein sequence | MRIKALWCLS EFRLSNKKGL YIKAFAHYLK VNILVALAYF VVGKIGLLIA LPPGYSAAIW
PAAGIAIASC IMWRQYAPWF GVLLGSWLIN INIGGALHLG WLPIAIASAS SLQAYVSAKV
IRRIDPVFTL DKPNTVIKSC LSLALTCMIA TLFANAALVV HGTIPLKDAL GSTVNWWIGD
LLGAVIFIPL TMLIFDQRSI WRSRRVQTGL PLLVGFLFCV GIYYYSDMNQ RQQLQDKFQI
QSNAIISSVE SFQESNLQQV IALASLFDNS EQVSEDEFIQ FGKRNQLQLD GFRAWAWSPL
IAASDKDSFE TETSTELGEP YKIRYLEGGA PNADGWLVPV KFVQPMNTSR AALGLDINGE
PSRAAAIAKV RATLSPVMTG KIQLAEDPNG PGGTLFLAPV FDRLGNIVGF CSAVIDLQSI
INEVEQVKGL HWRLTDMSAK GALLYANSQK TFPDFEGNIH SDKMGQYFQA NLMLADRHWH
IVIYESYSSL MGDTFSLSLL MLLLAFITCA VVGGMTLVSS GERHRIAEKV AEKTMALSKE
IARSQTFQAT LMESEQRYRT LFDKAPVGHA LKRLEDGQFV AINQAFMEIT GYTLEELQAI
DPWELTPIRY QSSETEQLER LKQTRRYGPY QKHYRHKDGQ LVAVRLNGSL VTAANGEQLI
LFIVEDITEQ ERTVARVNLL AQVFQQSGEG ITIMDANDII VDVNSAFTQI TGYSRDEIIG
KNCRFLEAER TDRSIDAQVR AALEQTGFWQ GEVWDRHKEG FDFPKWLMMS IVRDETGAIS
HYIGSFTDIS ERKVNEERIH FLAHHDSLTL LPNRLSLQSR LEKVFQEAFI SQTQIAVMFI
DMDHFKNIND TLGHHVGDML LLEVARRLKN IMGNDDIVAR LGGDEFVVVL SDTDHDRVAK
VAEALRSGLN QTYLIDNKPL HSSPSIGISL FPTDGDSVEA LMKNADMAMY RAKAAGRNNY
QFFTAAMNTL VTERQQIETG LRQAIACNEL LLYYQPQVDI SSGQVVGVEA LIRWQHPELG
LVAPDRFIPI AEEIDMIIPI GQWVLENALA QLAEWRDKGA KGLRMAVNLS AHQLRKDTIV
ADIINVLTKH KLGKGALELE ITESVAMQYP EQNAKLLAEL RQHGIELAID DFGTGYSSLS
YLKLLPLDRL KLDRSFVKDI ESDPNDAAIS AATISMAHEL GLTVVAEGVE NEAQLVLLSG
MGCDLVQGYY FSKPLAADDC FRFIERNF
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