Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_4003 |
Symbol | |
ID | 4480217 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 4806568 |
End bp | 4807146 |
Gene Length | 579 bp |
Protein Length | 192 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 639728618 |
Product | putative DNA uptake protein |
Protein accession | YP_871626 |
Protein GI | 117922434 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [S] Function unknown |
COG ID | [COG0316] Uncharacterized conserved protein [COG0694] Thioredoxin-like proteins and domains |
TIGRFAM ID | [TIGR00049] Iron-sulfur cluster assembly accessory protein [TIGR03341] IscR-regulated protein YhgI |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.860921 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTACTA TTTCCGATGC GGCTCAGGCC CATTTTGTAA AGTTGTTAGC CGATCAACCT GAAGGCACTC ATATTCGCGT ATTTGTGATC AGTCCTGGTA CCGCACAAGC CGAGTGTGGC GTGTCTTACT GCCCGCCTGA CGCTGTTGAA AGCGATGATA TTGAATTAGA ATTCAATGGC TTTAGCGCTA TGGTTGACGA GAAGAGTGCG CCTTTCTTAG AAGAAGCCTC AATCGACTTC GTGACCGACC AATTAGGTTC GCAATTAACC CTTAAAGCCC CTAACGCTAA AATGCGTAAA GTGGCTTCCG ATGCGCCTTT AGCCGAGCGT GTTGAATATG TGATCCAATC TGAAATCAAC CCACAACTGG CAAGCCATGG TGGTAACATC ATGTTGGTTG AAATCACCCA AGAAGGCGTA GCAGTACTGC AGTTTGGTGG CGGTTGTAAC GGTTGTTCAC AGGTCGATAT CACTTTAAAA GATGGTATCG AGAAGCAACT ATTAGATATG TTCCCAGGTG AACTCTCTGG TGTGAGCGAT GTGACCGATC ACCAACACGG CGCGCATTCT TACGCTTAA
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Protein sequence | MITISDAAQA HFVKLLADQP EGTHIRVFVI SPGTAQAECG VSYCPPDAVE SDDIELEFNG FSAMVDEKSA PFLEEASIDF VTDQLGSQLT LKAPNAKMRK VASDAPLAER VEYVIQSEIN PQLASHGGNI MLVEITQEGV AVLQFGGGCN GCSQVDITLK DGIEKQLLDM FPGELSGVSD VTDHQHGAHS YA
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