Gene Shewana3_3989 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3989 
Symbol 
ID4480203 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4791517 
End bp4792137 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content50% 
IMG OID639728605 
ProductLexA repressor 
Protein accessionYP_871613 
Protein GI117922421 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACCGT TGACGCCACG CCAAGCCGAA ATTTTAGAGC TGATTAAACG TAATATTGCC 
GAGACTGGCA TGCCACCCAC CCGGGCCGAA ATCGCCACCC GTTTGGGTTT TAAAAGTGCA
AATGCCGCCG AGGAACACCT TAAGGCATTG GCGAAAAAAG GCTGCATCGA GATCATGCCT
GGCACTTCCC GCGGGATCCG CCTCCCAGTT GAGGAAGAAG ATAACAGCGA ATCAGGCTTG
CCACTGATTG GCCAAGTGGC TGCGGGCGAA CCTATACTCG CCCAAGAGCA TGTCGAACAG
TATTACCAAG TCGACCCTAG CATGTTCCAC CCTGCCGCCA ATTTCTTACT ACGCGTCAGA
GGCGACAGTA TGAAGAACAT CGGTATCCTC GAGGGGGATC TTCTCGCCGT TCATAAAGTA
CAGCAAGCGC GCAATGGCCA AGTTGTTGTA GCTCGCGTTG ACGATGATGT AACAGTTAAA
CGCTTTGAAA AGAAAGGGAA TCTAGTTTAT CTACATGCAG AGAATGAAGA TTACTCCCCA
ATTAAAGTCG ATTTAAGTTT CCAAAGTCTA ACAATAGAAG GGCTCGCCGT AGGGGTGATC
CGCAATGGAG ATTGGCTATG A
 
Protein sequence
MRPLTPRQAE ILELIKRNIA ETGMPPTRAE IATRLGFKSA NAAEEHLKAL AKKGCIEIMP 
GTSRGIRLPV EEEDNSESGL PLIGQVAAGE PILAQEHVEQ YYQVDPSMFH PAANFLLRVR
GDSMKNIGIL EGDLLAVHKV QQARNGQVVV ARVDDDVTVK RFEKKGNLVY LHAENEDYSP
IKVDLSFQSL TIEGLAVGVI RNGDWL