| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3923 |
|---|
| Symbol | |
|---|
| ID | 4480137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4713715 |
|---|
| End bp | 4715772 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639728539 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_871547 |
|---|
| Protein GI | 117922355 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATGCA GGGCGTTTAA GAAAAGTGCA ATTGCAGTAA TGGTTTCGAG TTTAGTGATG
TCCTCAGCTT ACGCTGCTGT GGACGCAGAA TCTTCTGAAC CGATTGAAAA GATAACTGTT
TATGGTGAGA AAATCGAGCG TAGCCTTAAG GATACGACTT CCTCTATTTC GGTTATCGAT
AAAGACGCGC TCGACAGCGG TCAATATCAA TCTACCTCGA GTGCCTTATC TGAAGTGCCT
AACGTGGTGG TGCTTACGGG ATCTGTGCCG GATATCCGTG GGGTTTCTGG TAATGGTTCT
GCCTCTGGAT TTAACTCTTT TACCGGCGGT GCTCGGGCGC GGGTATCCAC CTTAGTCGAT
GGAGTTGCCG AACCTTTTGT GGCCGATCTT ACTGGTGATA CTGGTCTGTG GGATATCCAA
CAAATTGAGG TGTACCGCGG TCCGCAATCG ACAATTAACG GTCGTAACAG CATTGGCGGC
ACAGTGTTTA TTAAAACGGA AGACCCCACC TTCGATTGGC AAGGTGCGGC TCGTGTCGGT
TATCGCAATC AAGATAACTT TATCGATAGC GCCGTTATGC TCTCAGGCCC GATTCTCGAT
GATGAGTTGG CGTTTAGGGT GAGCGGACAA AATGTGACAG GGAATACCTT CAATAAAGGC
TTGGAATATG AGACAAATCC AGCCCCATTC GACCTCAATG AACTGATCAC CAATCGCTGG
CGCGGTAAAT TCCTGTGGCA GCCGAGTGCG ATTGAAGATC TCAAAGTGCT CTATAGCTTT
TCATACAATG ATGAGAAAGG TGACTCTGGG CGCAACTATT TTACCGGCGA TGATCCTTGG
GCGTTTAAGC CTATTTTCCA ACGTTATATC GAGACTAAAT CCACGACTCA CTCAGTGAAA
GTCGATTATG ACCTCGGTGA AGGCCGCGCC TTCGATCTCA TCGTCGCTTA TATGGATTAT
GACTGGGGCT TTGAATCCTA TGAGGCTCTC GCCACGGCGC AGCAATATGT TGATATGAAT
GACCAGAGTT ACACCGTCGA TGGTAAGTAC AGCTTTGGTC TAAAAGATAA AGATTTCAAC
GGCTTTGTGG GTTTAGCCTA TTTTAAACGC GATCAAGATT TTGGTAGTAC TGGCAGCTCT
GTTTACAGTG GGGATGACAG CACTGAATCC ACCTCCATTT ATGGTGAGAT GACCTATGGC
CTTGCCGAAT CTCTCTGGGT CACATTCGGT GGCCGCGTGA TGCGTGAGGA GCAATTGCGT
AACTTCAATA TGCTCTATCA AGGCAGCCAA TTGCGGGAAA AACTCGATAA TGCCAATACC
GTTACCCTGC CGAAGTTAGT GCTGCAATAT GCGCTGAATG ACAGCACAAC TTTAGCGGCC
AGCGTGCGTC GCGGTTATAA CTCGGGTGGC GGTGCGTTGT CGTTAGCCGA AAGTGAGTAT
TACTACTACG ACGAAGAGTA CGTTAATACC TATGAAATCA GCAGTCGCAG CGCGTTTATG
GATGGCGATG TTAACTTTAG TGCCAACCTG TTCTACAACG ATTTCGACGG TTACCAAGCC
TCTAACAGCG CCCGCAAAAT TACCAATATC GATAAAGCGG TCAGCTACGG TATTGAGGCT
GAATTCAGCG CTATGCTCAC CGAAAACCTG CAGTTTATTT CGGGCGTAGG TTTACTCGAT
AGTGAGACCA AGCAAGCGGA TCCTAGTTAT GGCGACATTA TCGGCAATCA GCTGAACTCG
GCGCCGCATG TGACCGCCAA TGCGGGCTTA AAATATTGGT TGGGCGATGC GTTTTCTTTC
GGTTTTTCAG GTAACTACGT AGGTGAGTAT TATGCGGATA TCAATAATAC TGAATCACGG
GTGGCTGGCG ATTATGTTGT TGCCCGCTTA AGCCTCGATT ATCAAACCGA TAGCTGGAGA
ATCAGCGGCT TTGTAAACAA CCTGTTTGAT GAGCAAGCGT TGACGGTAAA TGAACCCGCT
AGCCGCAGTT ATCCCGATGG TTATGCGGCG ATTATCGACC CTAGAAATCT CGGTGTATCT
GTGATGTACC GCTTCTAA
|
|---|
| Protein sequence | MECRAFKKSA IAVMVSSLVM SSAYAAVDAE SSEPIEKITV YGEKIERSLK DTTSSISVID
KDALDSGQYQ STSSALSEVP NVVVLTGSVP DIRGVSGNGS ASGFNSFTGG ARARVSTLVD
GVAEPFVADL TGDTGLWDIQ QIEVYRGPQS TINGRNSIGG TVFIKTEDPT FDWQGAARVG
YRNQDNFIDS AVMLSGPILD DELAFRVSGQ NVTGNTFNKG LEYETNPAPF DLNELITNRW
RGKFLWQPSA IEDLKVLYSF SYNDEKGDSG RNYFTGDDPW AFKPIFQRYI ETKSTTHSVK
VDYDLGEGRA FDLIVAYMDY DWGFESYEAL ATAQQYVDMN DQSYTVDGKY SFGLKDKDFN
GFVGLAYFKR DQDFGSTGSS VYSGDDSTES TSIYGEMTYG LAESLWVTFG GRVMREEQLR
NFNMLYQGSQ LREKLDNANT VTLPKLVLQY ALNDSTTLAA SVRRGYNSGG GALSLAESEY
YYYDEEYVNT YEISSRSAFM DGDVNFSANL FYNDFDGYQA SNSARKITNI DKAVSYGIEA
EFSAMLTENL QFISGVGLLD SETKQADPSY GDIIGNQLNS APHVTANAGL KYWLGDAFSF
GFSGNYVGEY YADINNTESR VAGDYVVARL SLDYQTDSWR ISGFVNNLFD EQALTVNEPA
SRSYPDGYAA IIDPRNLGVS VMYRF
|
|---|
| |