Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3829 |
Symbol | |
ID | 4480039 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 4598860 |
End bp | 4603377 |
Gene Length | 4518 bp |
Protein Length | 1505 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639728442 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_871453 |
Protein GI | 117922261 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATAGGGG TAATTTTGAG CCATCCAGTC CTTAAACTTT TCTTCGGCGC GCTCTGCTTA CTAAGCTTGT GCGGGGCGCC GCTCACAGGC TCAGCATTAC CTTTAAATGC GGCTAACACA CAGCTGAAAT TTGAACATAT CCGCAGCGAA GAAGGCTTAA ATCAGAATAC AATTACCAGC CTGTTTATGG ACAGTGCGGG TATGCTTTGG ATTGGAACTC AGGACGGCCT ACATAGTTAC AATGGCTATA ATTTCAATCT CTTTATTCAT TCGCCAAATA ATCCCAGCAG CATTTCAGAA AGCTTTATTT CCGACATTAT TCAAGATGCG GAAGGTTATC TGTGGATTGG CACCTTTAGC CAAGGGGTTA ATCGGCTCGA TCTCAATACG GGGACCTTTG AGCGCTTTGG CCTTGAACAG GGCCTAACCG ATCCTAGAGT GACCAAGCTC AATATTGTCG GCAATACGCT GTGGATTGGT ACCCAAGGCG GGTTGTTTTC ACTGTCGATT AAAACTCAGC GGATCACGCA AGTCTCCCTC GGCAACAGCG TCGAGCCACA TATCACTAGC CTCGCCAATG TTGAAAACAC CTATCTACTA GCTGGAACAA GGGCCAGTGG CACCTTTGCG CTGAGTTCAA ATGCCATCAC TAGGCTGAAT GTGCCGCAGG ATCTGACTGC CTACCAGATT AAAGCGAATT CGACTCGCGC CATCACCTTA GCGTTGGGCA ATCAGCTATG GCATTACGAT TTGGTTTCAC ACCAAGGAAG TATTCTCTGG CAGGCAGAGG ACGATATTCC TTACCTCAAG GATTTTATTC AAACACCCCA AGGACAGTTT TGGGTGGTCG GTCCCGAAGC GGGTCTTATC CAGCTAGAGC GTGAGGCGGG GCGTTTCGTT GCGGCTTACC ATAAATACGA TATGCAGCGT CCCAACAGTA TCAGCGACAA TAATATCCTC TGTTTATTGC AAGACACCTT CGGTAATCTC TGGCTCGGGG GAAGTTATTC TGGCTTGAAT AAGATCAACA CCCGTCGGCA GTACTTCCAA CATCTATTTG AATATACAAC CGAATTACCT CAGCAGAGCA ATAATATCCG CACCATTTTT CGTAGTCAGG ATAAAGCACT GTGGATAGGT ACCGAGGGCG CGGGCCTCAA GCGCTTAGCC TTCAATGCTA AACAATATGA ACATTACACT TCGGCTTTTG CTAAGGCACT CGGTAAAGAA ACGCGCCATT TAAATCTTGT CCTGCGTGCG ATCACCCAAG ACAGGCAAGG AGTGCTCTGG TTTGCCAGCA ATTATGGCTT AGGGCGCTTA ACTCCGAGCG GTGAATTTAC TCTGCTTAAG CTTACTCAAA GCCAAGATCC GGCCTCAGAA GCGAACTATA TTCGTAGCTT AGAGCTGGAT GCTCAGGGCC AACTCTGGGT AGCAACCTCC CACGCCTTGT ATCGAAAGGC GCTTGAAAAG GATGAGTTTA CCTCTGTCCC ACTCACAGAT ATTGAGAATT TTCATCCCAC ACAAAACCTA CTGCTGATAC TCAGAGCCGA CGGCAATACT CTGTGGATTG GTTCACTCAA TGGTTTAGTT AAACTCGATA TGCAAACGGG TCAAGGCCAA GCCTTTTACC ATGACCCAGA AAATAAAAAC ACCATTATTA ACAATCGGAT TCGAGACATT TTAGTCGCAA GTAATGGTGA CGTCTGGTTC GCGACCCACG GCGGTATTAG CAGGCTATCG GCTCAAGCCG AGGATATGGT TTTTAGGGAT TACACCCGCG AACAAGGCCT GCCGAGCGAC ACTATTTACG CCCTGCTCGA AGACGATGAG CACCATATTT GGTTCAGCAG CAATGCGGGC ATCGGCAAGT TGAATCCGAG CAATGGCAAA ATCATCAACT TCAACGAGCA AGAAGGTTTG CAGGCGTTAG AGTTTAACGG CGGCGTCAAA CTCAAAGACA GCGATGGCGA CCTCTGGTTT GGTGGCATTA ACGGCATCAA CCGCTTTAAT CCTAAGGCGA TACCCGACCA AAGAAGCGAA GCCAAAGTCG CCCTAACGGC CTATAAAATT GCGGGTAAGC GACACACTAT CCTCGATCTT AGCCATCCGC CTAAAATCCT GATGAACTAT GACGACCAGC TCGTCAGCTT TGAGGTCACT TCCCTCGATT TCAGTTACAC GGGGAAAAAT CGCTTTAGCT ATTATCTCGA AGGGTTTGAT AACCAATGGC ATGATCTGCC CTCGGGGAAT GAAATCACCT TTACCAATAT CAACCCCGGC CACTATGTGC TCCATGTTCG CCATTCTTTA GAGTACAACA GCGAGGGCAG CTATGCGCTG CTGGTCGATT TAACGGTCAA AGCGCCCTTC TATCGCTCGC AAATTGCCTA TGCACTCTAT GTCCTGCTAG CACTTGGTCT AATGGGCTGG ATAGTGTTGT GGCGTAAACA GAAGCGCGAA CAGCAACAAG AGTTTGAAAC CAGCATCCGT GCCTCTGAAG AACGACTCAA ACTGGCACTG TGGGCCTCGG GCGATGGCAT GTGGGACTGG AATATCCAAG AACAGCAGGT CTATCGTACT CATACGGATA TTCCGGTTTC CCAGTGGAGC AGCCATACGC TGCTGCACGA CAATGCCCAC CCAGAGGATA GAGAGCGCTT TAAACAAGTC TTGACCGACC ATTTACAAGG GCACACACCG TTTTTTGAAA TGGAATATCG CATCGAGCAC TCACCGGGCA ACTGGCTGTG GATCCTCGAG CGCGGCAAAG TGGTTGAGAC CAATAACCAG GAACAGCCCA TGCGGATGAC GGGCACCACC CGTAATATCA CCTCCCGCAA GCTGATCGAG AATGAGCTGG TGCTCTCCTC CCAAGTGCTT AACAGCATGA ACGAAGCCGT TGTGGTAGCA GGTTTAGACT ATCGTATCCG CTCGGTAAAC CCCGCCTTTA GCGCGATTAC CGGATATTCG GAGCGGCAAA TCAGTGATAA ATATTTAATT CACTTAGCCT ACAGCCGGCA GCAGCGAGAT CTGTTCAACA GTATTGAGCA GCAACTGCTA CGCCATAAAC ATTGGGCGGG TGAAATTTGG ATCCGCAACA GGGCGCGTAA GGCGATTCTG GTGTGGCTTG AGATCAACCA AGTGATCGAT GTAAAAGGCG AAACTAGCCA CTTTGTGGCG GTGTTTACCG ATATCACAGA GCGTAAAAAG GCCGAAGAGG ATCTCCGCTT CCTTGCCAGT TTCGACACCT TGACTGGACT GCCGAATCGC ACCTTATTCC AAGACAGGCT CAATCACGCC ATATCCCAAG CCCATAGGTC AAATAATATC GTCGCACTGC TATTTTTAGA TCTCGACCGC TTTAAACATA TTAATGACTC TATGGGGCAC CATATTGGCG ATCTGTTACT CAAAGCCGTG GCCCACAGAC TGCAAAATGC CGTTCGCGAA GGGGACACTG TGGCCCGCTT AGGTGGCGAT GAATTTACCA TTATTTTGGA AGGCGTGGCG AAAACCAAAG CGGCGACGCT GATCTCCGAG AAAGTGCTTA AAGCCTTCCA AGCTCCCTTC TTACTCGATG ATAAGTCCCT AACCATTTCA ACCTCAATTG GTATCAGCCT GTATCCCAAC GATGCGGAAG ATGTGGATTC GCTGATTAAG TTTGCCGACA CTGCCATGTA CCACGCTAAG GCGCTCGGGC GGAATAACTT CCAGTTTTAC ACTAATAAAC TCAATGAGAT GGCAACACGC CATGTGCAAC TCGAGGCGGG GCTTAAGCAG GCTATTTCTC GCAACGAGTT AAGCTTGGTA TATCAGCCAA AATTCTGTCT GCGCAAAGGT TCTCTGACCG GACTCGAGGC GCTGCTGCGC TGGCATCATT CCGAACTAGG TCCAATCTCG CCCGCCGAGT TTATTCCGCT GGCGGAGGAA ACCGGCATCA TTAACCAAAT TGGCCATTGG GTGATCAACC ACGCTTGCCA GCAACTCGCT GAGTGGAATG AGCTAGGTTT TGGCGATATC AGCATGGCGG TGAACCTTTC GGCCAGGCAG TTGAAGGCCG ATATTATTTC GACCATCGAA GTGGCTCTCT CGGTATCAGG TTTACCCGCC AAGGCGCTCG AGCTGGAGTT AACCGAGTCG ATGATCATGG GTAATCCGCA GGAGTCGGTT AATATCCTCT CGAAACTCAA GGCACTAGGT TTAACCATCG CGGTGGATGA TTTCGGTACT GGCTACTCGA GCCTGAGTTA TCTTAAACGT TTCCCTATCG ACACCTTAAA AATCGACCGT GAGTTTGTGC GCGACATTAC CAACGACCCC GACGATGCAG CCATTACCAG CGCGATTATC GCCCTCGCCC ACAGCCTAGA GTTAAATGTG GTGGCGGAAG GGGTCGAAAC CCAAGAGCAG CTGAACTTCT TGGCGCTACA AGGTTGCGAT CAAGTACAGG GCTTCCTGTT GAGTAAACCA CTCAGCGCCC AAGATTGCTT AGCACTGTTG CAACAACGGA TAAAATAA
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Protein sequence | MIGVILSHPV LKLFFGALCL LSLCGAPLTG SALPLNAANT QLKFEHIRSE EGLNQNTITS LFMDSAGMLW IGTQDGLHSY NGYNFNLFIH SPNNPSSISE SFISDIIQDA EGYLWIGTFS QGVNRLDLNT GTFERFGLEQ GLTDPRVTKL NIVGNTLWIG TQGGLFSLSI KTQRITQVSL GNSVEPHITS LANVENTYLL AGTRASGTFA LSSNAITRLN VPQDLTAYQI KANSTRAITL ALGNQLWHYD LVSHQGSILW QAEDDIPYLK DFIQTPQGQF WVVGPEAGLI QLEREAGRFV AAYHKYDMQR PNSISDNNIL CLLQDTFGNL WLGGSYSGLN KINTRRQYFQ HLFEYTTELP QQSNNIRTIF RSQDKALWIG TEGAGLKRLA FNAKQYEHYT SAFAKALGKE TRHLNLVLRA ITQDRQGVLW FASNYGLGRL TPSGEFTLLK LTQSQDPASE ANYIRSLELD AQGQLWVATS HALYRKALEK DEFTSVPLTD IENFHPTQNL LLILRADGNT LWIGSLNGLV KLDMQTGQGQ AFYHDPENKN TIINNRIRDI LVASNGDVWF ATHGGISRLS AQAEDMVFRD YTREQGLPSD TIYALLEDDE HHIWFSSNAG IGKLNPSNGK IINFNEQEGL QALEFNGGVK LKDSDGDLWF GGINGINRFN PKAIPDQRSE AKVALTAYKI AGKRHTILDL SHPPKILMNY DDQLVSFEVT SLDFSYTGKN RFSYYLEGFD NQWHDLPSGN EITFTNINPG HYVLHVRHSL EYNSEGSYAL LVDLTVKAPF YRSQIAYALY VLLALGLMGW IVLWRKQKRE QQQEFETSIR ASEERLKLAL WASGDGMWDW NIQEQQVYRT HTDIPVSQWS SHTLLHDNAH PEDRERFKQV LTDHLQGHTP FFEMEYRIEH SPGNWLWILE RGKVVETNNQ EQPMRMTGTT RNITSRKLIE NELVLSSQVL NSMNEAVVVA GLDYRIRSVN PAFSAITGYS ERQISDKYLI HLAYSRQQRD LFNSIEQQLL RHKHWAGEIW IRNRARKAIL VWLEINQVID VKGETSHFVA VFTDITERKK AEEDLRFLAS FDTLTGLPNR TLFQDRLNHA ISQAHRSNNI VALLFLDLDR FKHINDSMGH HIGDLLLKAV AHRLQNAVRE GDTVARLGGD EFTIILEGVA KTKAATLISE KVLKAFQAPF LLDDKSLTIS TSIGISLYPN DAEDVDSLIK FADTAMYHAK ALGRNNFQFY TNKLNEMATR HVQLEAGLKQ AISRNELSLV YQPKFCLRKG SLTGLEALLR WHHSELGPIS PAEFIPLAEE TGIINQIGHW VINHACQQLA EWNELGFGDI SMAVNLSARQ LKADIISTIE VALSVSGLPA KALELELTES MIMGNPQESV NILSKLKALG LTIAVDDFGT GYSSLSYLKR FPIDTLKIDR EFVRDITNDP DDAAITSAII ALAHSLELNV VAEGVETQEQ LNFLALQGCD QVQGFLLSKP LSAQDCLALL QQRIK
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