Gene Shewana3_3829 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3829 
Symbol 
ID4480039 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4598860 
End bp4603377 
Gene Length4518 bp 
Protein Length1505 aa 
Translation table11 
GC content49% 
IMG OID639728442 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_871453 
Protein GI117922261 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATAGGGG TAATTTTGAG CCATCCAGTC CTTAAACTTT TCTTCGGCGC GCTCTGCTTA 
CTAAGCTTGT GCGGGGCGCC GCTCACAGGC TCAGCATTAC CTTTAAATGC GGCTAACACA
CAGCTGAAAT TTGAACATAT CCGCAGCGAA GAAGGCTTAA ATCAGAATAC AATTACCAGC
CTGTTTATGG ACAGTGCGGG TATGCTTTGG ATTGGAACTC AGGACGGCCT ACATAGTTAC
AATGGCTATA ATTTCAATCT CTTTATTCAT TCGCCAAATA ATCCCAGCAG CATTTCAGAA
AGCTTTATTT CCGACATTAT TCAAGATGCG GAAGGTTATC TGTGGATTGG CACCTTTAGC
CAAGGGGTTA ATCGGCTCGA TCTCAATACG GGGACCTTTG AGCGCTTTGG CCTTGAACAG
GGCCTAACCG ATCCTAGAGT GACCAAGCTC AATATTGTCG GCAATACGCT GTGGATTGGT
ACCCAAGGCG GGTTGTTTTC ACTGTCGATT AAAACTCAGC GGATCACGCA AGTCTCCCTC
GGCAACAGCG TCGAGCCACA TATCACTAGC CTCGCCAATG TTGAAAACAC CTATCTACTA
GCTGGAACAA GGGCCAGTGG CACCTTTGCG CTGAGTTCAA ATGCCATCAC TAGGCTGAAT
GTGCCGCAGG ATCTGACTGC CTACCAGATT AAAGCGAATT CGACTCGCGC CATCACCTTA
GCGTTGGGCA ATCAGCTATG GCATTACGAT TTGGTTTCAC ACCAAGGAAG TATTCTCTGG
CAGGCAGAGG ACGATATTCC TTACCTCAAG GATTTTATTC AAACACCCCA AGGACAGTTT
TGGGTGGTCG GTCCCGAAGC GGGTCTTATC CAGCTAGAGC GTGAGGCGGG GCGTTTCGTT
GCGGCTTACC ATAAATACGA TATGCAGCGT CCCAACAGTA TCAGCGACAA TAATATCCTC
TGTTTATTGC AAGACACCTT CGGTAATCTC TGGCTCGGGG GAAGTTATTC TGGCTTGAAT
AAGATCAACA CCCGTCGGCA GTACTTCCAA CATCTATTTG AATATACAAC CGAATTACCT
CAGCAGAGCA ATAATATCCG CACCATTTTT CGTAGTCAGG ATAAAGCACT GTGGATAGGT
ACCGAGGGCG CGGGCCTCAA GCGCTTAGCC TTCAATGCTA AACAATATGA ACATTACACT
TCGGCTTTTG CTAAGGCACT CGGTAAAGAA ACGCGCCATT TAAATCTTGT CCTGCGTGCG
ATCACCCAAG ACAGGCAAGG AGTGCTCTGG TTTGCCAGCA ATTATGGCTT AGGGCGCTTA
ACTCCGAGCG GTGAATTTAC TCTGCTTAAG CTTACTCAAA GCCAAGATCC GGCCTCAGAA
GCGAACTATA TTCGTAGCTT AGAGCTGGAT GCTCAGGGCC AACTCTGGGT AGCAACCTCC
CACGCCTTGT ATCGAAAGGC GCTTGAAAAG GATGAGTTTA CCTCTGTCCC ACTCACAGAT
ATTGAGAATT TTCATCCCAC ACAAAACCTA CTGCTGATAC TCAGAGCCGA CGGCAATACT
CTGTGGATTG GTTCACTCAA TGGTTTAGTT AAACTCGATA TGCAAACGGG TCAAGGCCAA
GCCTTTTACC ATGACCCAGA AAATAAAAAC ACCATTATTA ACAATCGGAT TCGAGACATT
TTAGTCGCAA GTAATGGTGA CGTCTGGTTC GCGACCCACG GCGGTATTAG CAGGCTATCG
GCTCAAGCCG AGGATATGGT TTTTAGGGAT TACACCCGCG AACAAGGCCT GCCGAGCGAC
ACTATTTACG CCCTGCTCGA AGACGATGAG CACCATATTT GGTTCAGCAG CAATGCGGGC
ATCGGCAAGT TGAATCCGAG CAATGGCAAA ATCATCAACT TCAACGAGCA AGAAGGTTTG
CAGGCGTTAG AGTTTAACGG CGGCGTCAAA CTCAAAGACA GCGATGGCGA CCTCTGGTTT
GGTGGCATTA ACGGCATCAA CCGCTTTAAT CCTAAGGCGA TACCCGACCA AAGAAGCGAA
GCCAAAGTCG CCCTAACGGC CTATAAAATT GCGGGTAAGC GACACACTAT CCTCGATCTT
AGCCATCCGC CTAAAATCCT GATGAACTAT GACGACCAGC TCGTCAGCTT TGAGGTCACT
TCCCTCGATT TCAGTTACAC GGGGAAAAAT CGCTTTAGCT ATTATCTCGA AGGGTTTGAT
AACCAATGGC ATGATCTGCC CTCGGGGAAT GAAATCACCT TTACCAATAT CAACCCCGGC
CACTATGTGC TCCATGTTCG CCATTCTTTA GAGTACAACA GCGAGGGCAG CTATGCGCTG
CTGGTCGATT TAACGGTCAA AGCGCCCTTC TATCGCTCGC AAATTGCCTA TGCACTCTAT
GTCCTGCTAG CACTTGGTCT AATGGGCTGG ATAGTGTTGT GGCGTAAACA GAAGCGCGAA
CAGCAACAAG AGTTTGAAAC CAGCATCCGT GCCTCTGAAG AACGACTCAA ACTGGCACTG
TGGGCCTCGG GCGATGGCAT GTGGGACTGG AATATCCAAG AACAGCAGGT CTATCGTACT
CATACGGATA TTCCGGTTTC CCAGTGGAGC AGCCATACGC TGCTGCACGA CAATGCCCAC
CCAGAGGATA GAGAGCGCTT TAAACAAGTC TTGACCGACC ATTTACAAGG GCACACACCG
TTTTTTGAAA TGGAATATCG CATCGAGCAC TCACCGGGCA ACTGGCTGTG GATCCTCGAG
CGCGGCAAAG TGGTTGAGAC CAATAACCAG GAACAGCCCA TGCGGATGAC GGGCACCACC
CGTAATATCA CCTCCCGCAA GCTGATCGAG AATGAGCTGG TGCTCTCCTC CCAAGTGCTT
AACAGCATGA ACGAAGCCGT TGTGGTAGCA GGTTTAGACT ATCGTATCCG CTCGGTAAAC
CCCGCCTTTA GCGCGATTAC CGGATATTCG GAGCGGCAAA TCAGTGATAA ATATTTAATT
CACTTAGCCT ACAGCCGGCA GCAGCGAGAT CTGTTCAACA GTATTGAGCA GCAACTGCTA
CGCCATAAAC ATTGGGCGGG TGAAATTTGG ATCCGCAACA GGGCGCGTAA GGCGATTCTG
GTGTGGCTTG AGATCAACCA AGTGATCGAT GTAAAAGGCG AAACTAGCCA CTTTGTGGCG
GTGTTTACCG ATATCACAGA GCGTAAAAAG GCCGAAGAGG ATCTCCGCTT CCTTGCCAGT
TTCGACACCT TGACTGGACT GCCGAATCGC ACCTTATTCC AAGACAGGCT CAATCACGCC
ATATCCCAAG CCCATAGGTC AAATAATATC GTCGCACTGC TATTTTTAGA TCTCGACCGC
TTTAAACATA TTAATGACTC TATGGGGCAC CATATTGGCG ATCTGTTACT CAAAGCCGTG
GCCCACAGAC TGCAAAATGC CGTTCGCGAA GGGGACACTG TGGCCCGCTT AGGTGGCGAT
GAATTTACCA TTATTTTGGA AGGCGTGGCG AAAACCAAAG CGGCGACGCT GATCTCCGAG
AAAGTGCTTA AAGCCTTCCA AGCTCCCTTC TTACTCGATG ATAAGTCCCT AACCATTTCA
ACCTCAATTG GTATCAGCCT GTATCCCAAC GATGCGGAAG ATGTGGATTC GCTGATTAAG
TTTGCCGACA CTGCCATGTA CCACGCTAAG GCGCTCGGGC GGAATAACTT CCAGTTTTAC
ACTAATAAAC TCAATGAGAT GGCAACACGC CATGTGCAAC TCGAGGCGGG GCTTAAGCAG
GCTATTTCTC GCAACGAGTT AAGCTTGGTA TATCAGCCAA AATTCTGTCT GCGCAAAGGT
TCTCTGACCG GACTCGAGGC GCTGCTGCGC TGGCATCATT CCGAACTAGG TCCAATCTCG
CCCGCCGAGT TTATTCCGCT GGCGGAGGAA ACCGGCATCA TTAACCAAAT TGGCCATTGG
GTGATCAACC ACGCTTGCCA GCAACTCGCT GAGTGGAATG AGCTAGGTTT TGGCGATATC
AGCATGGCGG TGAACCTTTC GGCCAGGCAG TTGAAGGCCG ATATTATTTC GACCATCGAA
GTGGCTCTCT CGGTATCAGG TTTACCCGCC AAGGCGCTCG AGCTGGAGTT AACCGAGTCG
ATGATCATGG GTAATCCGCA GGAGTCGGTT AATATCCTCT CGAAACTCAA GGCACTAGGT
TTAACCATCG CGGTGGATGA TTTCGGTACT GGCTACTCGA GCCTGAGTTA TCTTAAACGT
TTCCCTATCG ACACCTTAAA AATCGACCGT GAGTTTGTGC GCGACATTAC CAACGACCCC
GACGATGCAG CCATTACCAG CGCGATTATC GCCCTCGCCC ACAGCCTAGA GTTAAATGTG
GTGGCGGAAG GGGTCGAAAC CCAAGAGCAG CTGAACTTCT TGGCGCTACA AGGTTGCGAT
CAAGTACAGG GCTTCCTGTT GAGTAAACCA CTCAGCGCCC AAGATTGCTT AGCACTGTTG
CAACAACGGA TAAAATAA
 
Protein sequence
MIGVILSHPV LKLFFGALCL LSLCGAPLTG SALPLNAANT QLKFEHIRSE EGLNQNTITS 
LFMDSAGMLW IGTQDGLHSY NGYNFNLFIH SPNNPSSISE SFISDIIQDA EGYLWIGTFS
QGVNRLDLNT GTFERFGLEQ GLTDPRVTKL NIVGNTLWIG TQGGLFSLSI KTQRITQVSL
GNSVEPHITS LANVENTYLL AGTRASGTFA LSSNAITRLN VPQDLTAYQI KANSTRAITL
ALGNQLWHYD LVSHQGSILW QAEDDIPYLK DFIQTPQGQF WVVGPEAGLI QLEREAGRFV
AAYHKYDMQR PNSISDNNIL CLLQDTFGNL WLGGSYSGLN KINTRRQYFQ HLFEYTTELP
QQSNNIRTIF RSQDKALWIG TEGAGLKRLA FNAKQYEHYT SAFAKALGKE TRHLNLVLRA
ITQDRQGVLW FASNYGLGRL TPSGEFTLLK LTQSQDPASE ANYIRSLELD AQGQLWVATS
HALYRKALEK DEFTSVPLTD IENFHPTQNL LLILRADGNT LWIGSLNGLV KLDMQTGQGQ
AFYHDPENKN TIINNRIRDI LVASNGDVWF ATHGGISRLS AQAEDMVFRD YTREQGLPSD
TIYALLEDDE HHIWFSSNAG IGKLNPSNGK IINFNEQEGL QALEFNGGVK LKDSDGDLWF
GGINGINRFN PKAIPDQRSE AKVALTAYKI AGKRHTILDL SHPPKILMNY DDQLVSFEVT
SLDFSYTGKN RFSYYLEGFD NQWHDLPSGN EITFTNINPG HYVLHVRHSL EYNSEGSYAL
LVDLTVKAPF YRSQIAYALY VLLALGLMGW IVLWRKQKRE QQQEFETSIR ASEERLKLAL
WASGDGMWDW NIQEQQVYRT HTDIPVSQWS SHTLLHDNAH PEDRERFKQV LTDHLQGHTP
FFEMEYRIEH SPGNWLWILE RGKVVETNNQ EQPMRMTGTT RNITSRKLIE NELVLSSQVL
NSMNEAVVVA GLDYRIRSVN PAFSAITGYS ERQISDKYLI HLAYSRQQRD LFNSIEQQLL
RHKHWAGEIW IRNRARKAIL VWLEINQVID VKGETSHFVA VFTDITERKK AEEDLRFLAS
FDTLTGLPNR TLFQDRLNHA ISQAHRSNNI VALLFLDLDR FKHINDSMGH HIGDLLLKAV
AHRLQNAVRE GDTVARLGGD EFTIILEGVA KTKAATLISE KVLKAFQAPF LLDDKSLTIS
TSIGISLYPN DAEDVDSLIK FADTAMYHAK ALGRNNFQFY TNKLNEMATR HVQLEAGLKQ
AISRNELSLV YQPKFCLRKG SLTGLEALLR WHHSELGPIS PAEFIPLAEE TGIINQIGHW
VINHACQQLA EWNELGFGDI SMAVNLSARQ LKADIISTIE VALSVSGLPA KALELELTES
MIMGNPQESV NILSKLKALG LTIAVDDFGT GYSSLSYLKR FPIDTLKIDR EFVRDITNDP
DDAAITSAII ALAHSLELNV VAEGVETQEQ LNFLALQGCD QVQGFLLSKP LSAQDCLALL
QQRIK