| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3797 |
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| Symbol | |
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| ID | 4480007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 4562861 |
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| End bp | 4563577 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639728410 |
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| Product | nucleotidase |
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| Protein accession | YP_871421 |
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| Protein GI | 117922229 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000341898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTTCT CAAGCCAGAT TAATTCTTCG GCCGCACCTT ACTCTTGGGT GCTTTTCGAT
GCCGATGAAA CCCTATTTTA TTTTGATGCT TTCGAAGGGT TGAAGCGGAT GTTTTCAGGC
TTTGGCATCG ATTTTACTCG GGCCGATTTC GATGAATATC AAAGTGTAAA TAAGCCGCTG
TGGGTTGAGT ATCAGGATGG CAAGATCAGC GCCGCCGAAC TGCAAACCAT ACGCTTCGAG
CCTTGGGCGG CAAAGCTTGC TGTGACCCCT CAAACCCTAA ACAGTGCATT TTTAACGGCT
ATGGCAGAGA TTTGTGCGCC CTTGCCCGGT GCCCGTGAAT TACTGGCCGC GCTGCAGGGA
AAAGCCAAAA TGGGGATCAT CACCAATGGC TTTACCGAGT TGCAGACAGT GCGTTTAGAG
CGTACTGGTT TACAGCATCA TTTTGATATT TTAGTGATTT CAGAAAAAGT GGGCATCGCA
AAACCCGATG TCGGTATCTT TGAATACGCC CTTGAGTTGA TGGGCCAGCC TGCGCGCGAA
CAAGTGTTAA TGGTGGGTGA TAACCCACAT TCAGACATTC AAGGCGGCAT CAATGCGGGA
TTCCACACCT GTTGGTATAA CGTCCATGGA CACGCTGCCC CCGCAGGTAT TCGCCCGCAC
TTTCAAGTCG CCTCCCACCA TGAGCTACAG CAGAAGCTAA TCTCATTACT CGGCTAG
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| Protein sequence | MSFSSQINSS AAPYSWVLFD ADETLFYFDA FEGLKRMFSG FGIDFTRADF DEYQSVNKPL
WVEYQDGKIS AAELQTIRFE PWAAKLAVTP QTLNSAFLTA MAEICAPLPG ARELLAALQG
KAKMGIITNG FTELQTVRLE RTGLQHHFDI LVISEKVGIA KPDVGIFEYA LELMGQPARE
QVLMVGDNPH SDIQGGINAG FHTCWYNVHG HAAPAGIRPH FQVASHHELQ QKLISLLG
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