| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3765 |
|---|
| Symbol | |
|---|
| ID | 4479975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4526576 |
|---|
| End bp | 4527463 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639728378 |
|---|
| Product | transporter DMT superfamily protein |
|---|
| Protein accession | YP_871389 |
|---|
| Protein GI | 117922197 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2962] Predicted permeases |
|---|
| TIGRFAM ID | [TIGR00688] rarD protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.36356 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGATA CTGAATACCG CAAAGGGATC CTACTCGCCG TCAGTGCTTA CTGTATGTGG
GGATTTGCGC CCTTATATTT CAAACTACTC CACCATGTTT CGGCGACCGA AATTTTACTG
CATCGGGTGA TCTGGTCATT TGTGTTTATG GTGATCATCA TGCTGTTTAT CGGTGGCTTT
GGAAAGCTGC GCCAACTGTT TAAACAGCCA AAGCAGTTAC TCGTGCTCAC CATCACCTCC
CTGCTGATTG CCGCCAACTG GTTGATTTTT ATCTGGGCCG TGAATAACGA TCATATGCTC
GATGCCAGCT TGGGTTACTT TATTAACCCC CTACTGAATG TGCTGCTCGG CATGCTGTTT
TTAGGTGAAA GATTACGTAA GTTGCAATGG TTTGCCGTCG CGCTGGCGAG TGCTGGCGTG
CTTATTCAGT TGATTTCATT CGGTTCAATC CCCATTGTTT CCCTCGCCTT GGCGGGCACC
TTCGGGGTGT ATGCGCTGCT GCGTAAAAAG GTCAACGTGG ATGCAAAATC GGGTCTGCTA
GTCGAAACCG CTATCCTGCT ACCGGTCGCA TTGGTTTATC TGGTCGCAAC CTTAGATAGC
GCCACGGCGA ATATGCTCAC CAACGATTGG CATCTTAACT TGTTGTTGAT GGCGGCGGGG
ATTGTTACCA CGATTCCACT ATTGTGTTTT GCCGGTGCAG CGGTACGTAT TCCATTGTCT
ATGCTCGGCT TTTTCCAATA TATCGGCCCG AGTATTATGT TTATCCTCGC GGTAACCTTA
TTCAATGAAC CCTTCGATGC CGAGAAGAGC ATCACCTTTG GTTTTATCTG GAGCGCCCTG
TTGGTGTTCA CCTTCGATAT GGCCTATAAA CGCAAAACGG CGCGATAA
|
|---|
| Protein sequence | MPDTEYRKGI LLAVSAYCMW GFAPLYFKLL HHVSATEILL HRVIWSFVFM VIIMLFIGGF
GKLRQLFKQP KQLLVLTITS LLIAANWLIF IWAVNNDHML DASLGYFINP LLNVLLGMLF
LGERLRKLQW FAVALASAGV LIQLISFGSI PIVSLALAGT FGVYALLRKK VNVDAKSGLL
VETAILLPVA LVYLVATLDS ATANMLTNDW HLNLLLMAAG IVTTIPLLCF AGAAVRIPLS
MLGFFQYIGP SIMFILAVTL FNEPFDAEKS ITFGFIWSAL LVFTFDMAYK RKTAR
|
|---|
| |