| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3735 |
|---|
| Symbol | |
|---|
| ID | 4479945 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4489288 |
|---|
| End bp | 4492014 |
|---|
| Gene Length | 2727 bp |
|---|
| Protein Length | 908 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639728348 |
|---|
| Product | preprotein translocase subunit SecA |
|---|
| Protein accession | YP_871359 |
|---|
| Protein GI | 117922167 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
|---|
| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000386708 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000368272 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGGTA AATTACTGAC AAAAGTATTT GGTAGTCGCA ACGACCGTAC CCTCAAAGGG
TTACAAAAAG TAGTTAATAA GATTAATGCG CTTGAAGCCG ATTATGAAAA ATTAACCGAT
GAACAGCTTA AGGCGAAAAC CGCCGAGTTC CGCGAGCGTT TAGCGGCCGG AGCTTCATTA
GAGAGCATTA TGGCGGAAGC CTTCGCGACC GTGCGTGAAG CATCGAAGCG CGTTTTCGAG
ATGCGCCACT TCGACGTGCA GTTACTCGGT GGTATGGTGC TCGACAGTAA CCGCATTGCT
GAAATGCGTA CCGGTGAAGG TAAAACCTTA ACCGCGACCC TCCCTGCCTA TCTAAATGCC
TTAACCGGTA AAGGCGTTCA CGTTATTACC GTCAACGATT ACTTAGCTCG TCGTGACGCG
GAAAACAACC GCCCACTGTT CGAATTCTTA GGCTTAACGG TCGGCATTAA CGTCGCAGGT
CTAGGCCAGC AGGCGAAAAA AGACGCCTAC AATGCCGACA TTACTTACGG TACCAACAAC
GAATTTGGTT TCGACTATCT GCGTGATAAC ATGGCGTTCT CGCCACAAGA GCGTGTTCAA
CGTCCATTGC ACTATGCCCT GATCGACGAA GTCGACTCAA TTCTTATCGA CGAAGCCCGT
ACGCCACTGA TTATCTCTGG TGCTGCGGAA GACAGCTCTG AGCTATACAT CAAGATCAAC
ACGCTTATCC CAAGTCTTAT CCGTCAAGAT AAAGAAGACT CTGAAGAGTA TGTAGGTGAG
GGTGACTACA GCATCGATGA AAAAGCCAAA CAAGTGCACT TCACCGAGCG TGGGCAAGAG
AAGGTTGAGA ACCTGTTGAT TGAGCGCGGC ATGTTAGCCG AAGGCGACTC ACTCTATTCA
GCGGCCAACA TTTCTCTGCT GCACCATGTG AATGCGGCGC TGCGTGCGCA TACCCTGTTT
GAGCGCGATG TTGACTATAT CGTTCAAGAT GGCGAAGTGA TCATCGTTGA CGAACACACT
GGCCGTACTA TGCCAGGTCG TCGCTGGTCA GAAGGCTTAC ATCAAGCCGT TGAAGCCAAA
GAAGGCGTTC GTATTCAAAA CGAAAACCAA ACTCTGGCAT CGATTACCTT CCAAAACTAC
TTCCGTTTAT ATGAGAAGTT AGCGGGTATG ACAGGTACGG CTGATACCGA AGCGTTTGAG
TTCCAGCACA TCTATGGTCT AGATACTGTG GTTGTGCCGA CCAACCGTCC TATGGTGCGT
AAGGATATGG CGGATTTGGT TTACCTCACC GCCAATGAAA AATATCAAGC GATCATTAAA
GACATCAAAG ATTGCCGTGA ACGTGGCCAA CCTGTATTGG TGGGTACAGT GTCTATTGAA
CAGTCTGAAC TGTTAGCGCG CTTAATGGTG AAGGAGAAGA TCCCGCACCA AGTGCTTAAC
GCTAAGTTCC ACGAAAAAGA AGCCGAAATT GTTGCCCAAG CGGGTCGTAC TGGCGCTGTG
ACTATTGCTA CTAACATGGC GGGTCGTGGT ACCGACATCG TGTTAGGCGG CAACTGGAAT
ATGGAAATCG AAGCCCTCGA GAATCCAACT GCTGAGCAAA AAGCCAAAAT CAAGGCCGAC
TGGCAAGAGC GCCACGATGC CGTGGTCGCC GCCGGTGGTT TACACATTTT AGGTACTGAG
CGCCACGAAT CTCGCCGTAT CGACAACCAG CTACGTGGTC GTGCGGGTCG TCAAGGTGAC
GCGGGTTCTT CACGTTTCTA CCTGTCGATG GAAGATAGCT TAATGCGCAT CTTCGCCTCG
GATCGTGTCT CAGGCATGAT GAAGAAACTG GGGATGGAAG AAGGTGAAGC GATTGAACAT
CCATGGGTTT CCCGTGCGAT TGAAAACGCA CAACGTAAAG TAGAAGCGCG TAACTTCGAT
ATTCGTAAGC AACTGCTCGA ATTTGACGAT GTCGCAAACG ACCAGCGTCA AGTGGTTTAC
GCACAGCGTA ACGAGTTGAT GGATGCCGAA AGTATCGAAG ACACCATCAA AAACATCCAA
GACGATGTGA TCAGTGCGGT GATCGATCAA TACATTCCGC CACAATCAGT GGAAGAGTTA
TGGGATGTGC CTGGTTTAGA GCAACGTTTA CAGCAAGAAT TTATGCTGAA ACTGCCAATC
CAAGAATGGC TAGATAAAGA AGACGACTTA CACGAAGAAA CATTGCGTGA GCGTATCATC
ACTTCTTGGT CTGATGCGTA TAAAGCAAAA GAAGAAATGG TCGGTGCGCC AGTACTACGC
CAGTTCGAAA AAGCTGTGAT GCTGCAAACC CTCGATGGTC TGTGGAAAGA ACACTTAGCG
GCGATGGATC ACTTACGCCA AGGTATCCAC TTACGTGGTT ACGCGCAGAA GAATCCAAAG
CAAGAATATA AGCGCGAGTC GTTCGAACTA TTCCAACAAT TACTGTCGAC CTTAAAGCAT
GATGTCATTA GCGTGCTATC TAAGGTACAA GTACAAGCAC AGTCAGACGT AGAAGAGATG
GAAGCGCGTC GTCGTGAAGA AGATGCTAAG ATCCAACGCG ACTATCAGCA TGCAGCAGCC
GAAGCCTTAG TCGGTGGGGA TGATGGTAGC GACGAGATGA TGGCCCACAC GCCAATGATC
CGCGACGGCG ATAAAGTGGG CCGTAACGAT CCTTGTCCTT GTGGCTCAGG CCGTAAGTAT
AAGCAGTGCC ACGGCAAGCT AAGCTAA
|
|---|
| Protein sequence | MFGKLLTKVF GSRNDRTLKG LQKVVNKINA LEADYEKLTD EQLKAKTAEF RERLAAGASL
ESIMAEAFAT VREASKRVFE MRHFDVQLLG GMVLDSNRIA EMRTGEGKTL TATLPAYLNA
LTGKGVHVIT VNDYLARRDA ENNRPLFEFL GLTVGINVAG LGQQAKKDAY NADITYGTNN
EFGFDYLRDN MAFSPQERVQ RPLHYALIDE VDSILIDEAR TPLIISGAAE DSSELYIKIN
TLIPSLIRQD KEDSEEYVGE GDYSIDEKAK QVHFTERGQE KVENLLIERG MLAEGDSLYS
AANISLLHHV NAALRAHTLF ERDVDYIVQD GEVIIVDEHT GRTMPGRRWS EGLHQAVEAK
EGVRIQNENQ TLASITFQNY FRLYEKLAGM TGTADTEAFE FQHIYGLDTV VVPTNRPMVR
KDMADLVYLT ANEKYQAIIK DIKDCRERGQ PVLVGTVSIE QSELLARLMV KEKIPHQVLN
AKFHEKEAEI VAQAGRTGAV TIATNMAGRG TDIVLGGNWN MEIEALENPT AEQKAKIKAD
WQERHDAVVA AGGLHILGTE RHESRRIDNQ LRGRAGRQGD AGSSRFYLSM EDSLMRIFAS
DRVSGMMKKL GMEEGEAIEH PWVSRAIENA QRKVEARNFD IRKQLLEFDD VANDQRQVVY
AQRNELMDAE SIEDTIKNIQ DDVISAVIDQ YIPPQSVEEL WDVPGLEQRL QQEFMLKLPI
QEWLDKEDDL HEETLRERII TSWSDAYKAK EEMVGAPVLR QFEKAVMLQT LDGLWKEHLA
AMDHLRQGIH LRGYAQKNPK QEYKRESFEL FQQLLSTLKH DVISVLSKVQ VQAQSDVEEM
EARRREEDAK IQRDYQHAAA EALVGGDDGS DEMMAHTPMI RDGDKVGRND PCPCGSGRKY
KQCHGKLS
|
|---|
| |