| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3733 |
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| Symbol | |
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| ID | 4479934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 4474035 |
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| End bp | 4475912 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639728337 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_871357 |
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| Protein GI | 117922165 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAGT TCGGCAGTTT ATTGGTTTTG TTACTCGGTA TGCTTATATC ATTTGGCGGC
TTTGCCAATA CGATGAGCAT AGATGAGCAC ACGTCTACAC CACTAAACCT AACTCCGTGG
TTGATGGTGA CGCACTCCAA TGCTAACCCT CAGCTAGACG ATATTCAGGC GTTGCCCAAG
TCTCAATGGC ACAAGTTTAC CAGTGATGAT ATTCAACGCC TTAGCCAACA TGATTTTTGG
CTTCGCGTAA ACCTTACGAG TGGTGATGAG AGTCTTGCAC GCATTCTCGC CCTCGATAAT
CCGTTATTGG ATAGAGTGAC CATCTTCCAT TTGGTGAATA ATCAGCTCAT CAACACCACT
GAGATGGGGG ATACACTGCT CTATAAGAAC CGCCCACTGC CGAGCAATAT CTTTCTGTAT
CCTTTTAAAC TAAGCAGCAA TGAGCAACAT ACCTTCTATC TACACATCGT TACCGAAGGC
AGTGCGGCAA TACCTCTCAG CCTTTGGTCA GCCAATGATT TAGCTCAAAT TGCCGAATCA
ACTGCCGTTG AGCATGGCTT TCAGCTCGGC GTGCTCGCCG CGATAGGGAT TTTCAGTCTG
TTTATCGCCT TGGCCTCTGG TTCATTCAGC TATAGCTATT ACTCAGGTTA TGTCCTATGC
ATGACGCTAT TAGTGGCCAC GATCAATGGT TATGCATTCC GTTTTCTCTG GCCCAATTGG
CCAGCGTTAC AGCAACTGAT GGTGCCCGTG CTGTTACCTC TAGTGATGGC CTTTGCCTTA
ATGTTCACCG AGAAAATCCT GCAACTAAAA TACTATAACC GCCGGATGTT ATTAATGTGC
CGCTACAGCG CGGTCTACAT TATTCTTGTT GGGCTTTTAG TCCCCTTTTT GCGCTACGGA
ACCGTGCTGT ATATCGAGAT AATCTCGGTA GCGATACTCA GCATCATCAT GATGATACTT
GCCATCATAC AAGCCATTAA CGGTCAAAAG CTGGCAAAGC TCTATACCAT CGGCTGGGTG
AGTATGCTTA CTGGCGCCTG CATCAGCAGC CTACTCTATT TGAGTGTTAT CGAGTTCAAT
ATCAAGCCGC AAACGCCGGT GATGCTTGGG CTCACCTTCG AAATCATCTT TATGTCGCTG
GTCCTCGCTA TCCGCTATAA CGATGAGCGC AAATCTAAGC TCCGCATTCA ACAGGAAGCC
CTCAAGCAAG CACAAAAGAT CCGTAGTGCC CGTGAGGAAG CCTTGAAAGT GGAAGCTGAA
ACCAATGAAA GACTCGAACA GATGGTGCAG GAGCGCACAT TAGAGCTTGA GATCACTCTG
CGCGAATTGC ATGAAGTTAA TCAAAAACTT ACCGAACAGA GCACTATCGA TAGCTTAACC
GGCGTGAAAA ACCGCAGCGC CTTTGATAAA CGACTACTCG CCGAGAGCCG GATCAGCCGT
CGCCAAGAAA CCCCCATCGC CTTACTGATG CTGGATATCG ACCGATTTAA ATCGATTAAC
GATCAATTCG GCCACCTAGC AGGGGATCAG GCCTTAAAAG TGATAGCGAC AACCTTGCAG
CAACATTTAA AACGACCAAC CGATCTAGTA TCACGTTTTG GTGGTGAAGA GTTTGCTATT
ATTCTCCCCA ATACGACTGC GGAAGGCGCC ATTCAAGTCG CTGAAAGCAT AAGAGATGCA
GTGACTAGCA TCGGCCTAGC ATGGGAAGGA AAGCCCATTC CCTTGACCGT GAGTATCGGT
GTCAGTGCCG ACGTGATCAG TAACGACCAA CACAGTACCG AATTATTAGA GCAAGCCGAC
AAAGCGCTCT ATCAGGCAAA AAATAGCGGA CGCAATCAAG TCAAATTGTA TGCGCCAGCA
CAAACAGAAC CTACTTAG
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| Protein sequence | MAKFGSLLVL LLGMLISFGG FANTMSIDEH TSTPLNLTPW LMVTHSNANP QLDDIQALPK
SQWHKFTSDD IQRLSQHDFW LRVNLTSGDE SLARILALDN PLLDRVTIFH LVNNQLINTT
EMGDTLLYKN RPLPSNIFLY PFKLSSNEQH TFYLHIVTEG SAAIPLSLWS ANDLAQIAES
TAVEHGFQLG VLAAIGIFSL FIALASGSFS YSYYSGYVLC MTLLVATING YAFRFLWPNW
PALQQLMVPV LLPLVMAFAL MFTEKILQLK YYNRRMLLMC RYSAVYIILV GLLVPFLRYG
TVLYIEIISV AILSIIMMIL AIIQAINGQK LAKLYTIGWV SMLTGACISS LLYLSVIEFN
IKPQTPVMLG LTFEIIFMSL VLAIRYNDER KSKLRIQQEA LKQAQKIRSA REEALKVEAE
TNERLEQMVQ ERTLELEITL RELHEVNQKL TEQSTIDSLT GVKNRSAFDK RLLAESRISR
RQETPIALLM LDIDRFKSIN DQFGHLAGDQ ALKVIATTLQ QHLKRPTDLV SRFGGEEFAI
ILPNTTAEGA IQVAESIRDA VTSIGLAWEG KPIPLTVSIG VSADVISNDQ HSTELLEQAD
KALYQAKNSG RNQVKLYAPA QTEPT
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