| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3677 |
|---|
| Symbol | |
|---|
| ID | 4476276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4416454 |
|---|
| End bp | 4417389 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639728282 |
|---|
| Product | SPFH domain-containing protein/band 7 family protein |
|---|
| Protein accession | YP_871302 |
|---|
| Protein GI | 117922110 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00253892 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGTGT TTACCTTAGT CATTTTATTT GTCTTGTTTA TTCTCTATAA GCTGATGCTG
ATAGTGCCGA TGCGTGAGGT GCATGTCATT GAGCGTTTGG GGAAATTCCG TACCGTACTG
CAACCGGGAT TCCACTTCTT AATCCCTTTC TTCGATCGCG TCGCATATAA ACACGATACC
CGTGAGCAAG TGCTCGACGT GCCGCCACAA AGCTGTATCT CAAAGGATAA CACCCAGCTT
GAAGTGGACG GCTTAGTGTA TCTCAAGGTT ATGGACGGCA AATTAGCGAG CTACGGTATT
GAAAATTATC GTAAAGCTGC CGTGAATCTG GCGCAGACCA CTATGCGTTC TGAAATCGGT
AAGCTCACCC TCAGTGAGAC CTTTTCCGAG CGTGATCGCT TAAACGAATC CATAGTGCGC
GAGATTGATA AGGCGTCTGA GCCTTGGGGG ATCAAAGTGT TACGCTATGA GATCCGTAAT
ATCACGCCAT CGCGCCATGT GATCCATACC CTCGAAAAAC AAATGGAAGC CGAGCGTCGT
AAGCGCGCCG AAATCACTTT GGCCAATGCC GAAAAGGCCG CGATGATCAA TATGTCAGAG
GGTGAGCGCC AAGAGGCGAT TAACATTTCT GAAGGCCAAA AACAGAAGCG TATCAACGAA
GCTAAAGGTA CCGGGCAAGA AATTGCCATT ATCGCTAAGG CAAAGTCCGA AGGCATGGCG
ATGATTTCCC AAGCGTTAGA GGTGAATGGC GGTAACGATG CGATGAATAT GCTGTTAAAA
GAGCAGTTTA TTGCTCAGGT CGGTAAGATC CTCAACGATT CGCAAGTGTC GGTTGTCCCC
GCGGAAATGG CAAAACTCGA AGGATTCTTC GAAGGAATGG AACAAGTCAC CCAAACCGTG
GGTGGCCATA ATGCAACGAG CAAAGGAGCA CGCTAA
|
|---|
| Protein sequence | MFVFTLVILF VLFILYKLML IVPMREVHVI ERLGKFRTVL QPGFHFLIPF FDRVAYKHDT
REQVLDVPPQ SCISKDNTQL EVDGLVYLKV MDGKLASYGI ENYRKAAVNL AQTTMRSEIG
KLTLSETFSE RDRLNESIVR EIDKASEPWG IKVLRYEIRN ITPSRHVIHT LEKQMEAERR
KRAEITLANA EKAAMINMSE GERQEAINIS EGQKQKRINE AKGTGQEIAI IAKAKSEGMA
MISQALEVNG GNDAMNMLLK EQFIAQVGKI LNDSQVSVVP AEMAKLEGFF EGMEQVTQTV
GGHNATSKGA R
|
|---|
| |