| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3609 |
|---|
| Symbol | |
|---|
| ID | 4476209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4333461 |
|---|
| End bp | 4334519 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639728217 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_871237 |
|---|
| Protein GI | 117922045 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCGG ATCAACAATT TGCCCGCCTC GTAAAAATCG CCATGTTCGG TTTTGTGGCT
GTGTTTGGCT ATTTTATGTT TGCCGACGCT ATGATGCCCT TGACCCCACA GGCCATGGCA
ACCCGTGTGG TGACTAAGGT GACTCCGCAG ATCAGCGGTA AGATTCAAAC CATTAATGTG
AAGAATAACC AAGTGGTCGC CAAGGGCGAT TTACTGTTTC AAGTCGACCC CGCCCCCTTT
GAGTTAGCCG TGTCTCAGGC CAAGTTGGCC CTAGAGCAAG TGCGTCAGGA CAATGCCGAG
TTAGATGCTT CGTTGCTAGC CGCCAAGGCG GAAGTGAATG CCAGTACCAC TACGGCTCAA
CTTAAGCGCC GTGAAGCTAA ACGTTTAGAT GCGCTGTATG CCACCCATGG TGTGTCGCAG
CAGCAACGGG ATCAGGCCGA TAGCGATGCG GATGCTGCCG AGGCGAATCT GTTAGCCGCT
AATGCTCGCC TCGATAAACT CAAAGTGAGC CGTGGCCTCT ATGGCGAAGA AAACCTCAGA
GTGCGCCAAG CGAAAAATGC CTTAGAGCAA GCCGAGCTGA ACCTGTCTTA CACCCAGATT
CGTGCCGACC AAGATGGGGT GGTGACCAAC CTGCAACTCG AAGTGGGTAG TTTTGCCGCT
GTGGGCCAGC CGCTACTCGC CTTAGTCTCT GATAAATTAG ATATTATTGC CGACTTTCGT
GAAAAGACTT TACGTGGCGT TAACGCATCT TACCCTGCAT TAATCGCCTT CGATGGTGAG
CCTGGCCGTT TATATCGCGC CCAAGTGAGC AGTGTGGATG CCGGTGTGAG TGCGGGGCAG
TTTGATGCTA ATGGCCGTTT AGCAGCGCCG CAGGAGTCGG ATCGTTGGGT GCGTGATGCG
CAGCGCTTAA GACTGCATTT AGTATTAGAC GACAATGCGA TGAATAACCT GCCAGCAGGT
GCGCGTGCCA CAGTGCAATT GCTGCCTGAC AATACGCTGT TTAGCCTGCT AGCCAAGGTG
CAGATTAAGG TCATTAGCCT GCTCCATTAC ATCTATTAA
|
|---|
| Protein sequence | MTPDQQFARL VKIAMFGFVA VFGYFMFADA MMPLTPQAMA TRVVTKVTPQ ISGKIQTINV
KNNQVVAKGD LLFQVDPAPF ELAVSQAKLA LEQVRQDNAE LDASLLAAKA EVNASTTTAQ
LKRREAKRLD ALYATHGVSQ QQRDQADSDA DAAEANLLAA NARLDKLKVS RGLYGEENLR
VRQAKNALEQ AELNLSYTQI RADQDGVVTN LQLEVGSFAA VGQPLLALVS DKLDIIADFR
EKTLRGVNAS YPALIAFDGE PGRLYRAQVS SVDAGVSAGQ FDANGRLAAP QESDRWVRDA
QRLRLHLVLD DNAMNNLPAG ARATVQLLPD NTLFSLLAKV QIKVISLLHY IY
|
|---|
| |