| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3597 |
|---|
| Symbol | |
|---|
| ID | 4476197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4320450 |
|---|
| End bp | 4321646 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639728205 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_871225 |
|---|
| Protein GI | 117922033 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTAG CTTTACTCGC ATTGACGCTA AGCGCCTTTG CTATTGGAAC AACAGAGTTT
GTCATCGTGG GATTAATTCC CACTATGGCG CAGGATTTAC AGGTTTCTCT CCCCTCGGCG
GGATTATTAG TAAGCCTCTA TGCCCTTGGG GTAGCCGTCG GCGCCCCAGT CTTAACTGCC
TTAACGGGGC ATTGGAATCG TAAGCATGTG TTGTTAGCGG TAATGACACT ATTCGTTTCG
GGGAATGTGC TCGCATGGCA AGCCCCGAGC TATGAAACTT TGATTGCGGC GAGAGTGATT
ACAGGCTTAG CCCATGGGGT GTTTTTTTCG ATTGGCTCAA CCATTGCCAC AGGACTGGTA
CCAAAGGAAA AAGCGGCCAG CGCCATTGCG ATTATGTTTA CAGGACTGAC CGTCGCACTG
GTAACTGGTG TGCCCCTAGG GACTTATATC GGCCAGAGTT TTGGTTGGCA ATCAACCTTT
TTAGCCGTTG CTTTGCTCGG CCTTATCGCA CTGATAGGCA GTGCATTCTT AGTGCCGAAC
AACCTTAAGC AGACCCGTGC AGCCAGTTTA CTGACCCAAG CGAAAGTGCT GACCGAGCCA
AGGCTGCTGT TGGTATTTGC CATTACAGCA ATTGGGTATG GCGGTACTTT TGTTGCCTTT
ACTTTTCTCG CACCGATTTT ACAGCAGATC AGTGGTTTCG ATGCGAGTGC GATAGGGGCG
ATCATGTTGG TGTATGGTGT CTCGGTCGCT ATAGGCAACA TCTGGGGCGG TAAGATGGCC
GATAATATGG GGCCAATCAA AGCGCTAACT TATATTTTTA CTGGGTTAGC CGCTGTGCTG
TTTATCTTCC ACTTTACGGC GTTAAACCCT ATTACCGCAG TGTTAACCAT ACTCGTTTGG
GGCGCTTTTG CCTTTGGCAA TGTCCCTGGA TTACAGGTCT ATGTTGTCAA ACTGGCTGAA
ACCTATGCAC CAACCGCAGT AGATGTGGCC TCGGGACTTA ATATAGCCGC CTTCAACATA
GGGATTGCCT TAGGTGCCTG GGGAGGTGGA CTCATTGTCG AGCAGATGGG ATTAATGCAA
ACCCCATTGA TTGGTTCGCT AGTGGTGATT GCGGCGCTGC TATTAACTCG CCTGAGTGGT
TATTTGGATA CTCGGACTGA GCCTGTTGAT ACGTCAGTCG ATGGTGTTAA GCAATAG
|
|---|
| Protein sequence | MPLALLALTL SAFAIGTTEF VIVGLIPTMA QDLQVSLPSA GLLVSLYALG VAVGAPVLTA
LTGHWNRKHV LLAVMTLFVS GNVLAWQAPS YETLIAARVI TGLAHGVFFS IGSTIATGLV
PKEKAASAIA IMFTGLTVAL VTGVPLGTYI GQSFGWQSTF LAVALLGLIA LIGSAFLVPN
NLKQTRAASL LTQAKVLTEP RLLLVFAITA IGYGGTFVAF TFLAPILQQI SGFDASAIGA
IMLVYGVSVA IGNIWGGKMA DNMGPIKALT YIFTGLAAVL FIFHFTALNP ITAVLTILVW
GAFAFGNVPG LQVYVVKLAE TYAPTAVDVA SGLNIAAFNI GIALGAWGGG LIVEQMGLMQ
TPLIGSLVVI AALLLTRLSG YLDTRTEPVD TSVDGVKQ
|
|---|
| |