| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3543 |
|---|
| Symbol | |
|---|
| ID | 4476143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4244988 |
|---|
| End bp | 4246967 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639728152 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_871172 |
|---|
| Protein GI | 117921980 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGGCA AGTTAAGGCA ACTCATAGGT ACATTGCAGC AACAGTCGCG CTCTACCGTC
GCTAAGGTAC TGTTGATTAT TGGCATGTTT ATCGGGATCT GCATCACCCT CGTCTTCCTC
GTCTATATTC AGGGCAATAT TTTCGATGGT GTGCGCACCT ATGTCAGGGG CGAAGGACTC
TGGGCCAAAG CGCAAAAAGA TGCCACGTTT TACCTTATCC ACTATTCCTA CAACAAAAAC
GAAGTCGACT ATCAACGTTA TCTCGCGGCA ACGGCTGTGA TGCTAGGCGA CAGGCAAGCT
CGCGAGGCCC TACTCGCCTC GCCAATCGAT GAGTTAAAGG CCAAAGATGG CTTTATCCAA
GGTTTGAATG ATGAAAGGGA TACTGAATCT TTAATTTGGT TTTTTCGGCA TTTTAACCGC
ACTCACTATA TGCAACGGGC AGTTGAGATT TGGACCCTCG CCGACGAAAG ATTTAACACT
ATGATGTTAT TGGCAGACTC GATGCACGAT GAGGTTTCCC AATTTGGAGG CAGTCCACCA
GACCTTAGCC AATATCGGCA GCAGCTTATC CAGTTAAATG AAGAACTGCT CAGTTTAGAA
ATTGAATTCT CCTTAGTGCT TAGCGAAGGC GCTCGCTGGG TAAAACGCAT TACCTGGTTA
ATCAGCTTAG GAGTCGTCTT ACTCTTTATC AGCATAGGTA TTTTGGTCAG CAGGCAGATC
ATCCGCAACA TTGCAAAATC TGAAAAACAA CTATTAATCA GCGAGTCACG ATTTAGCAGC
CTTAAAAATT CCGACACCAT AGGCATTATT TCATGGCAGC TCGATGGCAC CATCCACGAT
GCCAATGATC ATTTTCTCCA TATGTTAGGT TTTGACCGTG AAGACTTAGC CGCGGGTCTG
ATCAACTGGC GCTCACTCAC GCCACCAGAG TTTGAGGCGA GGGATAACAT CGCAATCGCC
GAGCTTATCG AAATTGGCCA CTGTCATCAG TATGAAAAAC AGCTTATTAG CAAAACGGGT
GCCCATGTGC CCGTCATGCT TGGTGCAAGC TTTTTAAATA GCAGCACCCA GGAAGGTGTC
GCCTATTTTA TGGATTTGAC CAGCAGTAAG CAGGCCGAAG ATAAACTGAG ACTGGCCGCA
ACCGTGTTTA ATGCCAGCAC GGACGGCATC ATAATCACAG ACCCGCTGAT GAGTATTATC
TCTATCAATC AGGCATTTAC CGATATAACC GGATTGACTG AGCAGAGTTT ACATCAAGAT
GCCTCACGCT TTATTAATAC GGGGCATCCG AACGAAGATG CCTATCAGGC CATGTGCAAT
CTGCTACAAC AGGGGGAGCA ATGGCAGGGT GAACTTATCA AGGAAACCGC ATCGGGTTAT
CTGCCCTTAA GTGTGCGGAT AAACACGGTA AGGAATGAGC ACAACCGACT GACTCACTTC
GTGATTGTAA TAACCGATAT TTCGGAGCGC AAAGCCGAAG AAGAACATTT ACGCCACATT
GCCCACCACG ATGCCCTCAC CAATCTTCCC AATCGGGTGT TATTCCATAC TAAATTGGAG
CAGGCGATAG TGCATGCGCA GCGATCCGAT GGGATCTTTG CCATTCTGTT TCTCGACTTA
GATAACTTCA AACCAGTCAA CGATGAGTTT GGCCACGATG TCGGCGATAA GTTATTGCAG
GAAGTGGCGA AACGGCTTAC CAGTAGCATT CGGCAAATCG ATACCATCAC TCGTCTCGGC
GGCGATGAAT TTGTGATTCT GTTGGAGCAC TTACCCAATG AGGAAAGTGT GCCCATTTTG
ATCCGCAAAA TTACCCAAGC ACTCACGGCA CCTTACATTA TCCATAAACA TAAGCTGCAC
ATCGGAGTGA GCATAGGCTC GGCCATTTAT CCCTGCCACG GCATCGATGC CAAGAGCCTG
ATCAACTATG CGGATCAAGC CATGTATGTG GTTAAAAAAG CCAACAAGCT GGTGCAATAA
|
|---|
| Protein sequence | MSGKLRQLIG TLQQQSRSTV AKVLLIIGMF IGICITLVFL VYIQGNIFDG VRTYVRGEGL
WAKAQKDATF YLIHYSYNKN EVDYQRYLAA TAVMLGDRQA REALLASPID ELKAKDGFIQ
GLNDERDTES LIWFFRHFNR THYMQRAVEI WTLADERFNT MMLLADSMHD EVSQFGGSPP
DLSQYRQQLI QLNEELLSLE IEFSLVLSEG ARWVKRITWL ISLGVVLLFI SIGILVSRQI
IRNIAKSEKQ LLISESRFSS LKNSDTIGII SWQLDGTIHD ANDHFLHMLG FDREDLAAGL
INWRSLTPPE FEARDNIAIA ELIEIGHCHQ YEKQLISKTG AHVPVMLGAS FLNSSTQEGV
AYFMDLTSSK QAEDKLRLAA TVFNASTDGI IITDPLMSII SINQAFTDIT GLTEQSLHQD
ASRFINTGHP NEDAYQAMCN LLQQGEQWQG ELIKETASGY LPLSVRINTV RNEHNRLTHF
VIVITDISER KAEEEHLRHI AHHDALTNLP NRVLFHTKLE QAIVHAQRSD GIFAILFLDL
DNFKPVNDEF GHDVGDKLLQ EVAKRLTSSI RQIDTITRLG GDEFVILLEH LPNEESVPIL
IRKITQALTA PYIIHKHKLH IGVSIGSAIY PCHGIDAKSL INYADQAMYV VKKANKLVQ
|
|---|
| |