| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3469 |
|---|
| Symbol | |
|---|
| ID | 4476812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4159363 |
|---|
| End bp | 4161633 |
|---|
| Gene Length | 2271 bp |
|---|
| Protein Length | 756 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639728078 |
|---|
| Product | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase |
|---|
| Protein accession | YP_871098 |
|---|
| Protein GI | 117921906 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
|---|
| TIGRFAM ID | [TIGR01371] 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTAA ACAGTCTTGG TTTTCCCCGT ATCGGGCGTC GTCGTGAACT GAAATTTGCC
CTCGAAAAAT ACTGGCGTGG TGAGAGCACT CAAGCTGAAC TGCATGAGGT GGCCAAGGAG
TTACGTCGTA CCCATTGGCA ATGGCAAGTG GCCGCAGGGA TCGAGCAAGT ACCAGTGGGT
GATTTTGCCT TTTACGATCA AGTGTTAACC CTAAGCGCGA CCCTAAACGC CATTCCTGAT
CGCCACCGCG GCGAGGGCGC TATCGATCTT GATACCTTAT TCCGCGTTGC CCGTGGTCGT
GCACCAACTG GCACCGATGC GCCAGCCTCG GAAATGACGA AGTATTTCAA CACTAACTAT
CACTACTTAG TGCCAGAGCT TAAGCAAGAC CAAGTGTTCT CTATCGCCTA TGAGCAGTTT
TTTGATGAAG TGGCCGAGGC ACAGGCGCTG GGTTATCAAG CCAAGCCCGT ATTGTTAGGC
CCTGTGAGTT ACTTGTATCT GGCCAAAACC GTGGGTCAGG ATTTCGATAA ACTCAGCCTA
TTGCCCAATC TGTTAAAGGC CTATGCCGAC ATTCTTGCGC GTTTTGCCGC GCAGGGCGTG
ACTTGGGTAC AGCTTGAAGA ACCTATTCTG GCGCTTGAAT TAACTCACGA TTGGCAAGCG
GCGATTAGCG AAGCTTATCA AGCGCTTAAA ACGGCTCAAG TGAAGATTTT ACTCACCAGT
TACTATGGGA GCATTAGTCA TCATCAGGCG CTGGTTTCCG CGTTGCCGGT GGCGGGTCTG
CACCTCGATT TAGTGACTGC CCCTGAACAA TTGGCCTTGT TTGCCAATGC CTTAAGATCA
GATCAAATTC TCTCTGCGGG TGTAGTTAAT GGCCGTAACG TGTGGGCGGC AGAGGTTGAC
CTGATTGTCG AGCGTATCGG CAGTGTTGCC AGAGACTTAG GTGCGCGCCT ATGGATTGGC
ACTTCCTGTT CACTGCTGCA CAGCCCTGTG GATTTAGAGG TAGAGACAAC CCTCACGCCA
GCGTTACGTC AGCAGCTCGC ATTTGCTAAG CAAAAGCTGT TGGAACTGGC CAATGTGCGC
CAATTGTTGC AGGCCCCTGA GTCTATCGCC GCTAAAGAGA TCGTTAACAC CTGTTTGGCA
CGCCGTGAGG CTAAGGCACA GGCGGCGGAT GCTAAAGTGA TCGCCCGAGT CGCAGCGCTG
ACCCAAGCTG ACTATGAACG TGTGAGCGAA TTTACTGAGC GCCAAGCGGT ACAGCAGCGC
AAGTATCGTT TGCCATTGCT GCCCACGACC ACGATAGGTT CGTTCCCACA AACGCCTGCC
ATCCGTGGTT TACGTAGCCG CTGGCGCAAA GGGGAGTTAA GCGATGCCCA ATATACCGAG
CAGTTGCAGC AAGTGACCCG CGATACCATC GACCGCCAAC TTAAACTCGG TATCGATGTG
CTAGTACACG GTGAGGCCGA GCGTAACGAC ATGGTGGAAT ACTTCGGCGA GCAGCTCGAA
GGCGTGGGAT TTACCAAAAA TGGTTGGGTG CAGAGTTATG GTTCTCGCTG CGTTAAGCCG
CCATTGATTT ATGGCGATGT GAGCCGCCCG AAAGCGATGA CGGTTGATTG GGCCGAATTC
GCCCAAAGCC TGACGGACAA ACCCGTCAAA GGCATGCTAA CGGGCCCGGT GACGATTCTA
CATTGGTCGT TTGCCCGTGA AGATATCAGC CGCGATACCA TTGCCACCCA ATTGGCGCTG
GCAATCAGAG ATGAAGTGGT GGATTTACAA AATGCGGGCA TTGGCATTAT CCAAATTGAT
GAACCAGCCT TCCGCGAAGG TTTGCCATTA AAGCAAAGCG AGTGGCAAGC TTACTTAGAT
TGGGCGGTGA ATGCCTTTAA ACTGAGTGCA GCGGGTGTTG TGGATGAAAC TCAAATCCAC
ACCCATATGT GCTACAGCGA GTTTAACGAC ACGATCGCCG CCATTGCCGC CATGGATGCA
GATGTGATCA CCATCGAGAC CTCGCGTTCA CGCATGGAGC TGCTCAACGC CTTTGAAGAT
TTTGAATATC CAAATGAAAT TGGCCCAGGC GTTTACGATA TCCATTCGCC AAATACGCCA
AGTGTTGAGG CCATGGTGCA CCTTATCGAA AAAGCGGCGC AAAAAGTGCC TGTGCGTCAA
CTCTGGGTTA ACCCTGATTG CGGCCTGAAG ACCCGCACTT GGGATGAGGT TGAGCCCGCG
CTGAAGAACA TGGTCGATGC GACCCGCGAA TTGCGTCGCC GCCTTGGCTA A
|
|---|
| Protein sequence | MQLNSLGFPR IGRRRELKFA LEKYWRGEST QAELHEVAKE LRRTHWQWQV AAGIEQVPVG
DFAFYDQVLT LSATLNAIPD RHRGEGAIDL DTLFRVARGR APTGTDAPAS EMTKYFNTNY
HYLVPELKQD QVFSIAYEQF FDEVAEAQAL GYQAKPVLLG PVSYLYLAKT VGQDFDKLSL
LPNLLKAYAD ILARFAAQGV TWVQLEEPIL ALELTHDWQA AISEAYQALK TAQVKILLTS
YYGSISHHQA LVSALPVAGL HLDLVTAPEQ LALFANALRS DQILSAGVVN GRNVWAAEVD
LIVERIGSVA RDLGARLWIG TSCSLLHSPV DLEVETTLTP ALRQQLAFAK QKLLELANVR
QLLQAPESIA AKEIVNTCLA RREAKAQAAD AKVIARVAAL TQADYERVSE FTERQAVQQR
KYRLPLLPTT TIGSFPQTPA IRGLRSRWRK GELSDAQYTE QLQQVTRDTI DRQLKLGIDV
LVHGEAERND MVEYFGEQLE GVGFTKNGWV QSYGSRCVKP PLIYGDVSRP KAMTVDWAEF
AQSLTDKPVK GMLTGPVTIL HWSFAREDIS RDTIATQLAL AIRDEVVDLQ NAGIGIIQID
EPAFREGLPL KQSEWQAYLD WAVNAFKLSA AGVVDETQIH THMCYSEFND TIAAIAAMDA
DVITIETSRS RMELLNAFED FEYPNEIGPG VYDIHSPNTP SVEAMVHLIE KAAQKVPVRQ
LWVNPDCGLK TRTWDEVEPA LKNMVDATRE LRRRLG
|
|---|
| |