Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3458 |
Symbol | |
ID | 4476801 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 4143817 |
End bp | 4146093 |
Gene Length | 2277 bp |
Protein Length | 758 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639728067 |
Product | TonB-dependent receptor |
Protein accession | YP_871087 |
Protein GI | 117921895 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.485472 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.120897 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGA ATACTATCAA AATGAGTTGC ATTGCTTTAG CTATCTCATC TGCATTGGCA GCACAATATG CTGTTGCCGA GGATGAAAAT AGCACCGGGG AGAAGCAAGC TACCTTAGAA CGCATTGAAG TCACCGCTCG TAAGTCCATT GAGAGCCTGC AAAACGTACC AGTTGCAGTG ACCTCGGTCA GTGCTGACGA TTTGGCGGAA AATGGCATCA GTGTGATGAC TGAAATCCAG CAATTTTCAC CCAACACTAC GCTGCAATCC AGTCGCGGCA CTAACTCTAC CCTCACGGCC TTTATTCGCG GTGTCGGCCA GGAAGATCCG CTCTGGGGCT ATGAGCCCGG CGTCGGTATC TATATCGACG ATGTGTATAT CGCCCGCCCA CAGGGCGCGG TGCTCGATAT CCTCGATGTG CAACGTATCG AAGTACTGCG TGGCCCACAG GGCACCCTCT ATGGTAAAAA TACCATCGGC GGCGCGGTCA AATACGTGAC CAAGAAGATG AGCGGTGACG CTGAGTTAAA CCTCAATGCC ACCATCGGCA GCTACAACCA GCAAGACTAC AAGATAGCAG GTCAATTACC TTTAATTGAT AACAAGCTGT ATATTGGTGG CGCCTTCGCA AGCTTAAATC GCGATGGTTA TGGTGATTTC ATCACCTCAG CATTACCAGA CCAAGACACT GAAAACTATA ACAAAGATGT TATGGCAGGG CGTGTGAGCT TAGAATACAC GCCAACCGAC GATCTGTTTA TGCGCCTCAA CTACGACAAA ACCACAGATG AGTCGAATTC AAAGGGGGGC TACCGCATGC TCCCCAGTGT CCTGACCGAT GCCCCTGTAC CAGACAGCAA ATACGACTCT TACACCAGTA TGCCAACCTG GAACAAAGTG GAAACCGAAG GTTGGGGGCT GACCATTGAA TACGGCTTGA ACGATGATTG GACACTGAAA TCCGTGACCT CATCCCGCGA GAGCTATTCG CCCACCAACA TCGACTTTGA CAACACCAGC CTGCGTATTT TGGACGTTCC AGCCATCTAC GATGACGAAC AATTTAGTCA GGAATTCCAA GCTAACTACG ACGGCGATAA CTTGAAACTC GTCTCAGGCC TTTATTACTT TAAAGGCGAT TCCTGCGGGA TGTTCGATTC CATCCTGTAT GAATATTACA AAGCCTACGG TGGTCTCACT CGTGAAGTTC GTGGTTGCAA CAACAGTGAA AGCTATGCCG CCTACGCTCA GGGCTCTTAC GACATCACTG ATAAATTGTC GATGACCGCA GGTTTGCGTT ATACCCGCGA AACGAAGGAT GCCACTGTCT ATAACGGCAT CATGTTTACG ACGCTTTATC CCGAAACTGG CTGGATCCCA GGATATGTTC GCGATGAAGA TGCCATCAAC GCCAGTATTC CTAAGGTGTT AGATGATGAA GAAACCTGGT CGAAACTCAA TCCACGCTTA GGTTTAGAGT ACCAACTCAG CGACGATATG ATGCTCTTTA CCAGCTATTC ACAGGGCTTC AAGTCGGGCA CCTTTAACCC AAGGGCAACG GGTCCAGAAC CCGCAGTAGA CCCAGAAGTC GTTGATTCCT ATGAGCTGGG TATGAAGAGT GAATGGTTTG ACAGGCTGCG AGTTAACGCA ACCGCCTTCT ACTTAGACCA TAAAGACAGA CAGTTCGTGA CCGTATTACC CGGTGAAAAC GCGTCCGATC TTAACCAACG TCTAGGCAAC ATTGGTAAAT CGACCGCCAC GGGTCTAGAA CTCGAAGTGG AATACGCCGC GACTGAGTCA TTAAATCTGT TCGCGACTCT GGGCTTAATC GATGCCAGCT TCGAGGAAGT AATCTCCTAC GATAGCGATG GAAACCGCAT CGATATCAGC GACACTTACA CTATCACCAA CACCCCAGAT ACCACGGCAA ACGTTGGATT TAGCTACAAT ATCGACACGG ATATCGGCAG CTTTGTGGCC AACGGTAACT ACTACTATCG CAGCGACTAC GACTTAGCCG TAGTAAATAA CCTGCTGAGC CAAGACGGTT ATGGCCTGCT AAACCTCGGC TTGAACTGGT ATAGCAACGA CGGTCACTGG CAAGCGGGTC TGCATTGGAA AAACGTCACT AACGAAGAAT ATCTGGTCGG TAACTACGCC TTCGTCACCC CAGATGGTAA TGGCGGATAT ATTCCAGGTT TAGGCGGTGA CAATACATTA ATTGGTTATT ATGGCGATCC AGAGACTATC TCTCTCACCG TTGGCTATAA TTTCTAG
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Protein sequence | MKQNTIKMSC IALAISSALA AQYAVAEDEN STGEKQATLE RIEVTARKSI ESLQNVPVAV TSVSADDLAE NGISVMTEIQ QFSPNTTLQS SRGTNSTLTA FIRGVGQEDP LWGYEPGVGI YIDDVYIARP QGAVLDILDV QRIEVLRGPQ GTLYGKNTIG GAVKYVTKKM SGDAELNLNA TIGSYNQQDY KIAGQLPLID NKLYIGGAFA SLNRDGYGDF ITSALPDQDT ENYNKDVMAG RVSLEYTPTD DLFMRLNYDK TTDESNSKGG YRMLPSVLTD APVPDSKYDS YTSMPTWNKV ETEGWGLTIE YGLNDDWTLK SVTSSRESYS PTNIDFDNTS LRILDVPAIY DDEQFSQEFQ ANYDGDNLKL VSGLYYFKGD SCGMFDSILY EYYKAYGGLT REVRGCNNSE SYAAYAQGSY DITDKLSMTA GLRYTRETKD ATVYNGIMFT TLYPETGWIP GYVRDEDAIN ASIPKVLDDE ETWSKLNPRL GLEYQLSDDM MLFTSYSQGF KSGTFNPRAT GPEPAVDPEV VDSYELGMKS EWFDRLRVNA TAFYLDHKDR QFVTVLPGEN ASDLNQRLGN IGKSTATGLE LEVEYAATES LNLFATLGLI DASFEEVISY DSDGNRIDIS DTYTITNTPD TTANVGFSYN IDTDIGSFVA NGNYYYRSDY DLAVVNNLLS QDGYGLLNLG LNWYSNDGHW QAGLHWKNVT NEEYLVGNYA FVTPDGNGGY IPGLGGDNTL IGYYGDPETI SLTVGYNF
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