| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3456 |
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| Symbol | |
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| ID | 4476799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 4141135 |
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| End bp | 4142364 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639728065 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_871085 |
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| Protein GI | 117921893 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000285815 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0164702 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACACCC AGATTCAGAT GAAAAAATCC TCAAAGCGTA AACTGATATT GATCTTAAGC
GGCTTAGTCC TCCTCGGGGG CGGCGCTTAT TTTCTGCTGC ATAAACCCGA GGCGGCCCCA
AGCTATGTGA CTGAACCCGT TAAGCGTGGC GACATTGAAA ACTCGGTACT CGCCAATGGC
ATGTTGCAGG CCTCCAAGTT GGTGAGTGTG GGCGCGCAAG TTTCGGGGCA AATTCAGAGC
CTGCCTGTGG ATCTTGGTCA AGAGGTGAAA AAAGGCGACC TTATCGCGCA AATCGACAGC
CTTGCGCAGC AAAATAACCT GCAAAATGCG CTGGCCTCCC TTAAAAGTAT CAATGCCCAG
TACCGCGCTA AACAGGCACA AATTCGTCAG GCAAAACTCG AATACACCCG TCAGCAGGAA
ATGCTCGCCG ATAAGGCCAG CTCCCGCGCC GACTTTGAAA CCGCCGAAGC CACGCTGACG
GTTTATCAAG CCGAGCTTGA GCAGTTACAG GCGCAAAAAC AACAAGCTGA GATTAATGTC
GACAGTGCCA GAATCGATTT AGGTTATACC AAGATCACCG CGCCTATGGA TGGCACCGTC
GTTTACTCTG CCGTTGAAGT GGGCCAAACC GTTAACGCCA ATCAAACCAC GCCAACCATA
GTCGAGATGG CACAGCTCGA TACCATGACG GTCAAGGCAC AGATCTCCGA GGCGGATATA
GTCAATGTGC ATCCGGGGCA GGCGGTGTAC TTTACGATTC TTGGTCGTCC CAACCATCCT
TATCGCGGCA CCCTAAGGGC GATTGAACCC GGCCCCACCT CCATGGATGG TGACGATAGC
AATATGAGTT CCAGCGATTC GGACGCCATC TACTACCACG GCTTATTCGA TGTCGAAAAC
CCCGACCGTA CCCTACGCAT TGGCATGACG GCGCAGATCT CGATTGTGCT CGCCAAAGCC
GATGATGCGC TGTTAGTGCC ATCACAGGTG CTGCGAGCTA AACCGCGGGA TAAAGCGGCA
TCGGCAAGCG ATCGCCAATC CCGCGGGCCG CAGTATCAAG TGCCTGTGCT GGTGAATAAC
CAAGTGCAAT ATGTGGATGT GACTGTCGGT ATTAATAACA AAATCAATGC CGAAATCCTG
TCTGGCCTGA ACGAAGGCGA CCAAGTGGTG CTCGGAATGC CCGCAGACGG TTCGACCATG
AAGTTCCGTG GCCCACCAAT GAGGTTTTAA
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| Protein sequence | MDTQIQMKKS SKRKLILILS GLVLLGGGAY FLLHKPEAAP SYVTEPVKRG DIENSVLANG
MLQASKLVSV GAQVSGQIQS LPVDLGQEVK KGDLIAQIDS LAQQNNLQNA LASLKSINAQ
YRAKQAQIRQ AKLEYTRQQE MLADKASSRA DFETAEATLT VYQAELEQLQ AQKQQAEINV
DSARIDLGYT KITAPMDGTV VYSAVEVGQT VNANQTTPTI VEMAQLDTMT VKAQISEADI
VNVHPGQAVY FTILGRPNHP YRGTLRAIEP GPTSMDGDDS NMSSSDSDAI YYHGLFDVEN
PDRTLRIGMT AQISIVLAKA DDALLVPSQV LRAKPRDKAA SASDRQSRGP QYQVPVLVNN
QVQYVDVTVG INNKINAEIL SGLNEGDQVV LGMPADGSTM KFRGPPMRF
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