Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3455 |
Symbol | |
ID | 4476798 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 4139162 |
End bp | 4141132 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639728064 |
Product | ABC transporter related |
Protein accession | YP_871084 |
Protein GI | 117921892 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.016844 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0104011 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTAAGC CATTACTGGA AGTGTCAGCT TGCTACCGCA GTTTTCAGGC GGGTGAGCAA CAACTGACTG TACTCAAAGA TATTAATCTT TCCATCGCCC GTGGTGAGAT GGTGGCGATT GTCGGCGCCT CGGGTTCGGG TAAGTCGACC CTGATGAATA TCTTGGGCTG TTTAGATAAA CCCTCAAAGG GCTCGTACTT TATCGATGGC CAAGATACCT CGCAGATGGA TGTGGATGAA TTGGCAAAGC TGAGGCGCGA GCATTTTGGC TTTATTTTCC AGCGATATCA TTTGCTTGGC GATCTCAATG CCGTGGGTAA CGTCGAAGTG CCCGCCGTGT ATGCGGGGAA AGATCGTCTC GAGCGTCGGG AGCGGGCGGA AAGCTTGTTA TCGCGTTTGG GTTTAGGTGA GCGCCTAGAC CATAAGCCGA ATCAGCTCAG TGGCGGCCAG CAGCAAAGGG TGAGTGTGGC GCGGGCGCTG ATGAATGGCG GCGATGTGAT CCTCGCCGAC GAACCGACGG GCGCCTTAGA TAGTCACAGC GGCGAAGAAA TGATGCGGCT GTTGCAGGAG CTGCACCGCG AGGGCCAGAC CATCATTATC GTGACCCACG ATATGCATGT GGCCCAGCAT GCCGACCGCA TTATCGAGAT TAAGGACGGG GTGATTATCA GCGATGAGCC TAATCCCGCC TCCAATATTG CTGCTGCGCC TAAGACCGAA GTGATCCCCG CCAAGACTAA GGCACGCGCC CGCGTGGCGG CATGGGACAG ATATGCCGAA GCCCTGAAAA TGGCGCTGCT GGCGATGTCG ACCCATAGAT TGCGCACCTT TTTAACTATG CTCGGGATTA TTATCGGTAT CGCCTCCGTG GTGTCTGTGG TGGCGCTGGG TGAAGGCTCG CAGCGGGAAA TCTTAAAGAG CATTAGTTCG ATGGGCACCA ATACCATAGA CATTCGCCCC GGCTCAGGCT TTGGTGATAG GCGCTCGGCA AGGGTGCGAA CTTTGACCGC AAGCGATGCT AATGCACTGA AAAACTTGCC CTATGTCGAT AGTGTCACCC CGAGCATTGG CTCGAGTGCG ACTGTGCGTT ATGGCAATAA GGCGGTCACG GCGACGGTGA ATGGCGTAGG GCCTGAGTTC TTCCGCGTTC GAGGCTATGA GCTTGCCCAA GGACAGTTTT GGGACGATGA CAGTGTTAAT GCGTTAGCCC AAGATGCGGT GATCGACGAG AACACCCGTA AACAGCTGTT CCCTAACAGT AGTGGCGCTA TGAATTCTGC CATCGGGGAA GTGATCTTCC TCGGGGATTT GCCGGTGCGG ATTATTGGCG TCACTCAGCC TAAGGAAAGC GCCTTTGGTA ATAGTGATGC CCTCAATGTG TGGGTGCCTT ACACGACGGT TTCTGGCCGT ATGGTAGGTA AAAAATACTT AGATGGCATT ACCGTGCGAC TCGATGAGTC GGTGCCGAGC AATGCGGCGG AGCAGGGCAT TATTAGCCTG CTGAAGATGC GCCACGGCAC CCAGGATTTC TTCACCATTA ACACGGATAC CATTCGCCAG AATATCGAGA AAACTACCGC GACCATGACG CTATTAATCT CGGCGATTGC GGTGATTTCA CTCGTAGTGG GTGGCATTGG GGTGATGAAT ATCATGCTAG TGTCGGTGAC CGAGCGCACC CGCGAGATTG GGGTTCGCAT GGCGGTCGGG GCGCGCCAGA GCGATATTCT GCGGCAGTTT TTAATTGAGG CCGTGTTGGT TTGTCTGTGC GGCGGCGCGC TTGGGGTGGC CTTGGCCTAT CTGATTGGCG TGGTGTTTGC CCAAGCGGGA GGCAGTTTCC AGATGATTTA TTCGACGACT TCTATTGTTG CCGCCTTCGC CTGCTCTACC TTAATCGGGG TGTTGTTTGG CTTCCTGCCC GCTCGTAATG CGGCGCGTTT AGACCCTGTT GATGCCCTAG CGAGAGAGTA A
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Protein sequence | MSKPLLEVSA CYRSFQAGEQ QLTVLKDINL SIARGEMVAI VGASGSGKST LMNILGCLDK PSKGSYFIDG QDTSQMDVDE LAKLRREHFG FIFQRYHLLG DLNAVGNVEV PAVYAGKDRL ERRERAESLL SRLGLGERLD HKPNQLSGGQ QQRVSVARAL MNGGDVILAD EPTGALDSHS GEEMMRLLQE LHREGQTIII VTHDMHVAQH ADRIIEIKDG VIISDEPNPA SNIAAAPKTE VIPAKTKARA RVAAWDRYAE ALKMALLAMS THRLRTFLTM LGIIIGIASV VSVVALGEGS QREILKSISS MGTNTIDIRP GSGFGDRRSA RVRTLTASDA NALKNLPYVD SVTPSIGSSA TVRYGNKAVT ATVNGVGPEF FRVRGYELAQ GQFWDDDSVN ALAQDAVIDE NTRKQLFPNS SGAMNSAIGE VIFLGDLPVR IIGVTQPKES AFGNSDALNV WVPYTTVSGR MVGKKYLDGI TVRLDESVPS NAAEQGIISL LKMRHGTQDF FTINTDTIRQ NIEKTTATMT LLISAIAVIS LVVGGIGVMN IMLVSVTERT REIGVRMAVG ARQSDILRQF LIEAVLVCLC GGALGVALAY LIGVVFAQAG GSFQMIYSTT SIVAAFACST LIGVLFGFLP ARNAARLDPV DALARE
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