Gene Shewana3_3444 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3444 
Symbol 
ID4476787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4126445 
End bp4127176 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content52% 
IMG OID639728053 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_871073 
Protein GI117921881 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000682278 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00874586 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGAGTTC CAAGAATTTA TCAACCTCAA CCATTAGCCG TAAATCAACA GCTGAATTTA 
GATGAGGATG GCGCAGCCCA TATTGGCAAA GTGTTGCGTA TGGGCAGTGG CGAACACATT
AGCCTGTTTA ATGGCGATGG TAATGATTAT CTTGCCGAAA TTGTCGATGC GGGTAAAAAA
TCGGTCACGG TAAAAGTGCT CTCCTGTGAG GCCAATCCAT CGGAATCGCC CCTCAACCTG
CATTTAGGCC AAGTGATTTC CCGTGGCGAT CGGATGGAGT TCACCATTCA AAAATCCGTT
GAGCTAGGGG TGAATACCAT TACGCCACTG TTTTCTGACC GCTGCGGTGT CAAGCTCACT
GGTGAGCGTC TCGAAAAGAA AATCCAGCAA TGGCAAAAGA TTGTGATCAG CGCCTGTGAG
CAATCCGGCC GTAGCCAAGT GCCCATCGTT CGCCCCGCCA TGGAATTACA GCAATGGTGC
AGCGAACCGA CCAGTGCTCT CAAACTCAAC TTGCACCCAA GGGCGGCGCA CGGTATCAAT
GGCTTAGACT TATCCCATAC CCGTGTACGC CTGCTGATCG GCCCCGAAGG GGGATTATCG
GCGGAAGAAA TCGCTATGAC GGAAACCTAC CAGTTTACCG ATGTGTTACT CGGCCCCCGA
GTGCTGCGCA CCGAAACCGC CTCACTCACG GCGATTACCG CGCTGCAACT TAGGTTCGGT
GACTTAGGTT AA
 
Protein sequence
MRVPRIYQPQ PLAVNQQLNL DEDGAAHIGK VLRMGSGEHI SLFNGDGNDY LAEIVDAGKK 
SVTVKVLSCE ANPSESPLNL HLGQVISRGD RMEFTIQKSV ELGVNTITPL FSDRCGVKLT
GERLEKKIQQ WQKIVISACE QSGRSQVPIV RPAMELQQWC SEPTSALKLN LHPRAAHGIN
GLDLSHTRVR LLIGPEGGLS AEEIAMTETY QFTDVLLGPR VLRTETASLT AITALQLRFG
DLG