| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3440 |
|---|
| Symbol | |
|---|
| ID | 4476783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4122443 |
|---|
| End bp | 4123240 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639728049 |
|---|
| Product | penicillin-binding protein, transpeptidase |
|---|
| Protein accession | YP_871069 |
|---|
| Protein GI | 117921877 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2602] Beta-lactamase class D |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0522212 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.234091 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGCGT TAGCCTTATC GGCTGTGTTG CTGGTGACAA CGATGATTGG CATGCCTGCG
GTGGCAAAGG AGTGGCAAGA GAACAAGAGC TGGAATGCTC ACTTTAGCGA ACATAAAACC
CAAGGCGTGG TTGTGCTGTG GAACGAGAAT ACACAGCAGG GTTTTACTAA CGATCTTAAA
CGGGCAAACC AAGCATTTTT ACCTGCATCG ACCTTTAAGA TCCCAAACAG TTTAATTGCC
TTGGACTTAG GTGTGGTTAA GGATGAGCAT CAAGTCTTTA AATGGGATGG ACAGACGCGA
GATATCGCCG CATGGAATCG CGACCATGAT TTAATCACCG CGATGAAGTA TTCGGTTGTG
CCTGTTTATC AAGAATTTGC CCGCCAAATT GGCGAGGCTC GTATGAGTAA AATGCTGCAC
GCCTTCGATT ATGGCAATGA GGATATCTCG GGCAATTTAG ACAGCTTTTG GCTCGATGGT
GGTATTCGAA TTTCGGCTAC CCAGCAAATC GCTTTTTTAC GCAAGCTGTA CCACAACAAG
CTGCACGTTT CTGAGCGTAG TCAGCGCATC GTCAAGCAAG CCATGCTGAC CGAGGCAAAT
GCCGATTATA TTATCCGAGC GAAAACTGGT TACTCGACGC GAATTGAGCC GAAAATTGGT
TGGTGGGTTG GCTGGGTCGA ACTCGATGAC AATGTGTGGT TCTTCGCGAC CAATATGGAT
ATGCCTTCCG CTGAGGGCCT AGGGTTACGT CAAAGCATTA CGAAAACAGT GCTGAAACAG
GAAAAAATTA TTCCTTAG
|
|---|
| Protein sequence | MRALALSAVL LVTTMIGMPA VAKEWQENKS WNAHFSEHKT QGVVVLWNEN TQQGFTNDLK
RANQAFLPAS TFKIPNSLIA LDLGVVKDEH QVFKWDGQTR DIAAWNRDHD LITAMKYSVV
PVYQEFARQI GEARMSKMLH AFDYGNEDIS GNLDSFWLDG GIRISATQQI AFLRKLYHNK
LHVSERSQRI VKQAMLTEAN ADYIIRAKTG YSTRIEPKIG WWVGWVELDD NVWFFATNMD
MPSAEGLGLR QSITKTVLKQ EKIIP
|
|---|
| |