Gene Shewana3_3406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3406 
Symbol 
ID4476749 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4074921 
End bp4076228 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content53% 
IMG OID639728015 
Productpoly(A) polymerase 
Protein accessionYP_871035 
Protein GI117921843 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0617] tRNA nucleotidyltransferase/poly(A) polymerase 
TIGRFAM ID[TIGR01942] poly(A) polymerase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000031653 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCTCGGG ATGCGCATTC GATCTCCCGT AAGCAGATCA GCGAAAACGC ACTTAAAGTA 
TTATACCGAT TGAATAAATC AGGTTTCCAG GCCTATTTAG TTGGTGGGGG CGTACGGGAT
TTACTCCTCG GACTCGAACC GAAAGACTTC GACGTGGTCA CCAATGCGAC GCCGGAAGAG
ATTAAAAAGC TGTTTCGCAA TTGCCGCGTA GTCGGACGCC GCTTCCGCCT CGCCCATATT
GTGTTTGGCC GCGATGTGAT TGAAGTTGCC ACCTTCCGTG GTCACCACGG CGACAGTAAT
GAAAAGATTT CCAAAGCCAA TGCCGAAGGG CGTTTGCTCA GGGATAACGT GTACGGTGAA
ATCGATGAAG ACGCAGAGCG CCGCGATTTT ACCGTCAACG CCCTTTACTA CGATATTAGC
GACTACTCTA TCCGTAGCTA TGGCGGCGGT ATGGAAGATC TTAAGGCGGG CACCTTAAGG
CTGATTGGCG ATCCCGAAAC CCGTTACCGT GAAGATCCAG TGCGTATGCT CAGGGCTGTG
CGTTTTGCCA CTAAGCTCAG CATGGCTATT GAAGAAGTGA CCGCTAAACC TATCAAACAG
TTAGCGCCAC TGCTCAAGGA CATTCCAGCC GCCCGCATGT ATGAAGAAGT GCTCAAACTT
TTCTTCGCCG GCAAAGCCAT GGCCAACTTT GAGATGATGC AGGAATATAA GCTGTTCGCG
CCGCTCTTCC CGCAAGTCGA CGCCCAATTA AAAGATGCGC CAAAAGGCCC TGCGATGAAG
ATGGTGCAAG CCATTATGAA GAGCACGGAT GCGCGCGTGA ACGAAGATAA GCCTGTTACT
CCGTCATTCT TCTATGCGGC GATCCTCTGG TATCCACTAC GTCAACGCGC CGAAGATATC
GCGGTCGAGA GCGGTCTGAC TTTATACGAT GCGTTTTTTG CCGCCATGGG TGATGTGATT
GAGCAGCAAT GCCAAACCAT CAGCATTCCG CGCCGTTTTA GTACGCCCGC CAAAGACATC
TGGCAATTGC AATTACGCTT CGATCGCAGC CAAGGCACAC GCGCCTTTAA ACTGTTAGAG
CACCCTAAAT TTAGAGCGGC CTACGACTTA CTGTTACTGC GCGGCGAAGT CGAAGGTGGC
AATGTCGCCA AGAGTGCCGC CTGGTGGCAA CAGTTTGTTG AAGCGGATGA AACCGAGCGT
TTGAACATCG CCCGCAGTGG TAACAAAGCG GCGGGTAACC GTAACCGCAA TTCACCACAG
CGCCGTCGCC GTCGCCCGAG TGCCGCTAAA GCCAAAGCCG CCGAATAA
 
Protein sequence
MPRDAHSISR KQISENALKV LYRLNKSGFQ AYLVGGGVRD LLLGLEPKDF DVVTNATPEE 
IKKLFRNCRV VGRRFRLAHI VFGRDVIEVA TFRGHHGDSN EKISKANAEG RLLRDNVYGE
IDEDAERRDF TVNALYYDIS DYSIRSYGGG MEDLKAGTLR LIGDPETRYR EDPVRMLRAV
RFATKLSMAI EEVTAKPIKQ LAPLLKDIPA ARMYEEVLKL FFAGKAMANF EMMQEYKLFA
PLFPQVDAQL KDAPKGPAMK MVQAIMKSTD ARVNEDKPVT PSFFYAAILW YPLRQRAEDI
AVESGLTLYD AFFAAMGDVI EQQCQTISIP RRFSTPAKDI WQLQLRFDRS QGTRAFKLLE
HPKFRAAYDL LLLRGEVEGG NVAKSAAWWQ QFVEADETER LNIARSGNKA AGNRNRNSPQ
RRRRRPSAAK AKAAE