| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3383 |
|---|
| Symbol | |
|---|
| ID | 4476726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4053213 |
|---|
| End bp | 4055489 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639727992 |
|---|
| Product | TonB-dependent receptor, plug |
|---|
| Protein accession | YP_871012 |
|---|
| Protein GI | 117921820 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTG CACTATCTTC AATAGCGCTT GCGGTCGCGA GCGTATGTTC ATCGGCTATG
GCCGCAGAGC TTCAAGGCCA AGTCACTGAT CAACAAGGTA ACGCGCTCGC CAATGCCCGC
GTCAGTGTTG ACGGCGGTAA CAGCACGACC ACGAATGCCC AAGGCCAGTA TCAACTCAAG
ATTGCCGATA ATAGTCACCT GCACCTACAC GTGAGTCATG CGAATTTTAA ACATAGCGAT
CAAGAGATTA GCTCAAAGAC AGGTTTGCTC ATTCAAGATG TGACGCTGAG CCAAACCCCG
ATGGAAAATA TTGTGGTAAC CGCATCGCCC CTCGCCCGCT CGGCCCTCGA AAGCACTACG
CCCATCAGCG TATTGACCGA GGATCAACTC AAACTCAACA CCGAACCCAC CTTGGGCGAC
ACCTTAGAAA AACTCCCCGG CGTACAGGCC TCTCACTTTG GTGCGGGCGC CAGTCGGCCG
ATTATCCGCG GCATGGGCGG CCCCAGAGTA CAAGTGCTTG AAAATGGCCT GTCGGTTGGC
GATGCCTCCA CTGTATCGGC GGACCATGCC GTGACCTCCG AGGCAGCCTC GGCGCAGCAG
ATTGAAATTC TTCGCGGTCC AGGCACCCTA CTCTATGGCA ATGGCGCCAT CGGCGGTGTC
GTCAATGTGG TCGATAGCCG CTACAGCGAA ACCCCAATCG ATGAAGTGAC AGGGCACTTT
GGCGCTCGCT ACGACAGTGC CAATCATGGC CAAACCTACA ATGGCGAACT CAACGGCGGT
AATGGCCAGT TCAACTGGCA TCTGGATGGC ACCCACAGAA AAACCGAGGA TGTCGACATT
CCCGGTAATG CCATTGCCGA TATGCCGACC ACCCACGGCA CCTTAGCCAA TAGCCAACTC
AAACTCGATG ATTACGCCGC AGGCGTTGGC TATACAGGGG ATTCGGGTTT TGTTAGCGTC
TCCGGCGCGC GCACCGAATC CAACTACGGC ATCCCCAGTC GTGGGGAAGC CGATGCACCC
AATATCAGCA TCGACTTACA AAAAACCGCT TGGCAGTTGC ATAGCGGGCT ACTCGACCCC
TTTGCTGGTT TTAGTAAGTT AAAATTCGAC GCAGCCTATA GCGATTATCA ACACGCCGAG
GAAGAAGATG GCGTTGCTGG CACCACCTTT TTTAACAAGC AGAGCGAAGC ACGTTTAAGC
CTGAACAATC ATCCTTGGGG CGAATGGCAA GGCACCCTAG GGCTGCATGC GGTGCACCGT
GACTTTGCGG TGGAAGGCGA CGAAGCCCTG ACCCCCGACA GTAAAACGGA CACTCTCGCT
GCTTTTATCG TGCAAGAACG TAAGCTTGGG GATTTTCGCT TTGAACTCGG CGGTCGCCTA
GAGCATTACC GCCTCACGCC CGATAGCATG CAGCTCGACA CGCTTAATGG CGAACAAGAG
TATCAACCTA ATGATTTAAC TGATAATAAT GTGACGCTGT CTGCGGGCGT GGTGTGGGAC
TTTAGTCCAT CATACAACCT AGGGCTGTCA CTCACCCGCG CCGAACGCTC GGCCACCGCC
GAAGAGCTTT ACAGCTACGG GCCACACGAT GCCACTCAAA GCTTTGAGCT AGGGTCGCAA
TTTAGCCTAG AGAATGGCCA AATCGTCGCC AACAGCGGCA GTAACGATAA GGAAATCGCC
AACAATATCG ACCTCACGCT GCGCAAGCTG GACGGCGCAT GGACTGGTTC ACTCAGCCTC
GCCTATAACC GAGTCAACAA CTTCTACTAT GAGCGCAATA CTGGACTGGT TGCCTCTGAT
CTGGTCAACA GCGATGAAGA AGGCGATATG CCGGTTTATC AATATACTCA AGGCGATGCG
GATCTTTATT CCATCGAGGC GCAGGCAACG ATTCCATTTA ATGATCTCTG GTCACTCGGG
CTCTTTAGCG ACTACACCCG CGGCAAACTC GTCGATGGCG GTAACTTACC GCAAATATCG
CCGATGCGTG TCGGCTCGAC ATTAAACTTC GATCTGCAGC AGTGGCACGC AGAGTTAGGC
GCCATAGGCT ATGCCCGCCA AACCGACACC GCCGACAATG AGACTGAAAC CGCAGGCTAT
GCCCTAGTGA ATGCGGCCGC CACTTATCGC TGGTATACCT CAAGCGGCGA TATTTTGGTT
TATCTCAAAG GCACCAACCT GCTTAATCAG GAGGCCCGTC CCCATACTTC CCTACTCAAG
GATTATGCGC CGTTAATGGG GCGAAACCTG ATGCTGGGAG TCACCTATAA CTTCTAA
|
|---|
| Protein sequence | MKLALSSIAL AVASVCSSAM AAELQGQVTD QQGNALANAR VSVDGGNSTT TNAQGQYQLK
IADNSHLHLH VSHANFKHSD QEISSKTGLL IQDVTLSQTP MENIVVTASP LARSALESTT
PISVLTEDQL KLNTEPTLGD TLEKLPGVQA SHFGAGASRP IIRGMGGPRV QVLENGLSVG
DASTVSADHA VTSEAASAQQ IEILRGPGTL LYGNGAIGGV VNVVDSRYSE TPIDEVTGHF
GARYDSANHG QTYNGELNGG NGQFNWHLDG THRKTEDVDI PGNAIADMPT THGTLANSQL
KLDDYAAGVG YTGDSGFVSV SGARTESNYG IPSRGEADAP NISIDLQKTA WQLHSGLLDP
FAGFSKLKFD AAYSDYQHAE EEDGVAGTTF FNKQSEARLS LNNHPWGEWQ GTLGLHAVHR
DFAVEGDEAL TPDSKTDTLA AFIVQERKLG DFRFELGGRL EHYRLTPDSM QLDTLNGEQE
YQPNDLTDNN VTLSAGVVWD FSPSYNLGLS LTRAERSATA EELYSYGPHD ATQSFELGSQ
FSLENGQIVA NSGSNDKEIA NNIDLTLRKL DGAWTGSLSL AYNRVNNFYY ERNTGLVASD
LVNSDEEGDM PVYQYTQGDA DLYSIEAQAT IPFNDLWSLG LFSDYTRGKL VDGGNLPQIS
PMRVGSTLNF DLQQWHAELG AIGYARQTDT ADNETETAGY ALVNAAATYR WYTSSGDILV
YLKGTNLLNQ EARPHTSLLK DYAPLMGRNL MLGVTYNF
|
|---|
| |