| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3357 |
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| Symbol | |
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| ID | 4477658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 4027170 |
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| End bp | 4029002 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 639727967 |
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| Product | diguanylate phosphodiesterase |
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| Protein accession | YP_870987 |
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| Protein GI | 117921795 |
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| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAACTTT CAAAGATTTT TCCATTACTT GCACTGATTT CTTTGTCTTT TCACTTTGCT
AAATATCTGC AGCTGTCGGC GATTGTGGTG TGTTCTTTGT CGCTCAGTAT TTTACTCGCC
ATTAATGCCC AAGATACGGG GAATGTATTT AATCTCGATT ATGTACGCGC CATTTTGGCG
GATCCGCGAA TTGCGGTTTT GCCAATTATC TCTGCCTATT TATTACGTTT TTTGAGTGCA
TGGAAGGGGC TGCAACTGAT TAAAGCGAAG GCGCTTAGTC GTTACTTAAA GCAACATTTA
AATTTATTTT TCCCGATAGT GATTGGTTTT ATTGGTCTGT TTGCCGTCGT TGCCGAAGCT
TCTATCTTTT TAGAATGGTT ATTTGCGCCA TTTATCGAAG GGTTGCAACA AGCGAGCCTG
GGCGTGCAAC TGTTTATGCG GATCCTGCTT ACCCATGTGC TCTGGTGTTT TGGAGTGCAT
GGCGATAACG CCTATCTACT GCTAATTGGT GTCGATAATG GTTTAATGCA ACTGGTACCG
CATTTAACGG CGAGCCAGTT TATGGACTTG TTTATTCTCT ACGGCGGTAG CGGTGCCACG
TTATCGCTGA TCATTGCCAT TTTTATTGGC GCTAAAGACA GTGCTACTCG GCATATTGCT
AAAATTGCCA CACCCTTTGC GATTTTTAAC ATCAACGAAA TTCTGATTTA CGGCCTACCG
ATTATCTTTA ATCCGCGTTT ATTAGTGCCG TTTATCCTAT CCCCACTGGT TAATTTTATC
TTGGCCTACA GTGCTATCCA TGTTGGGCTC TTAAGCTTTG AGGGGCACAG CTTTCCTTGG
ATCACGCCGC CACTGCTCAA TGCTTATATT GCCAGTGGTC ACATGAGTGC GGTGTTTTTC
CAGGTGTTAT TGATAGGGCT TGGGGTATTG ATTTATCTGC CCTTTGTTCG ACGTTTCTCC
TTGATGTCAG AGCACTATGA GTTTGATAGT GAATTAATCA AACGTGTGCA GTTTCAAGCG
GATATCGACC GCATGACGGA GCAGCATTAT TCACAGCAGC AGTCCGAATC ACTTAAGGCT
GAATTGAACC TCGAGAAGAC CATCAAAGAA GTCTTGGCGG GGGAGTTACA ACTACACTAT
CAACCTAAAA TTGCCTTAAG TACTAATCAT GTTGTTGGAT ATGAAGCGCT TATTCGCCTG
AAGGATGAAC ATGGTAAGTT AAAAGGGCCG TATTTTATTG ATGCCTTTCA GCGTGCGGGC
TATTCCCATA TCATCGACCG CTTTGTGATT AATACGGTTG CAGAGGATCT CGCTCGCTGG
GAATTAGAAG GTTTTTACCC AAAAGTGAGC ATCAATATCG ACCCAAACAA TATTACCGAT
CCCCAATTGT TGGCGACCAT GAATGAAAGG TTAGGCAGCG TCGCCAACCG AGTCGAGATT
GAGATGTTAG AATCGGCCTT TATGTTGGAT TTAAATCGTA TCGATAACAG CATGAAGCAG
CTTAAACAAC ATGGGTTTAG CTTCTTTTTA GATGACTTCG GGACTGGGTT TTCTAGCTTA
AGTTTACTGA GTCGGATCAA TGTGGATGGC ATTAAGCTCG ACCGCAGTAT TCTGGCTAAT
ACCTGTGAGC CCAAAGGGCG TACCTTGTAT CTGCAGATCT GTAAGCTTTG TAATAGTTTA
GGCTTTAGTT TGATTGCCGA AGGAGTTGAG ACCCCTGAAG AAGCCGAGTT TGTTAACGCG
GCGGGGGTGA GTTATGTGCA GGGCTGGTTA TACGCCAAGG CGATGCCAGG ACCCGAGGCT
AAAGCCTTTT GGTTGGAGAG AAATAGTGAG TGA
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| Protein sequence | MQLSKIFPLL ALISLSFHFA KYLQLSAIVV CSLSLSILLA INAQDTGNVF NLDYVRAILA
DPRIAVLPII SAYLLRFLSA WKGLQLIKAK ALSRYLKQHL NLFFPIVIGF IGLFAVVAEA
SIFLEWLFAP FIEGLQQASL GVQLFMRILL THVLWCFGVH GDNAYLLLIG VDNGLMQLVP
HLTASQFMDL FILYGGSGAT LSLIIAIFIG AKDSATRHIA KIATPFAIFN INEILIYGLP
IIFNPRLLVP FILSPLVNFI LAYSAIHVGL LSFEGHSFPW ITPPLLNAYI ASGHMSAVFF
QVLLIGLGVL IYLPFVRRFS LMSEHYEFDS ELIKRVQFQA DIDRMTEQHY SQQQSESLKA
ELNLEKTIKE VLAGELQLHY QPKIALSTNH VVGYEALIRL KDEHGKLKGP YFIDAFQRAG
YSHIIDRFVI NTVAEDLARW ELEGFYPKVS INIDPNNITD PQLLATMNER LGSVANRVEI
EMLESAFMLD LNRIDNSMKQ LKQHGFSFFL DDFGTGFSSL SLLSRINVDG IKLDRSILAN
TCEPKGRTLY LQICKLCNSL GFSLIAEGVE TPEEAEFVNA AGVSYVQGWL YAKAMPGPEA
KAFWLERNSE
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