Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3353 |
Symbol | |
ID | 4477654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 4022623 |
End bp | 4024617 |
Gene Length | 1995 bp |
Protein Length | 664 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639727963 |
Product | transketolase |
Protein accession | YP_870983 |
Protein GI | 117921791 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0021] Transketolase |
TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.741116 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTCCC GTAAAGTACT CGCCAACGCA ATCCGTGCGT TAAGTATGGA TGCAGTTCAA AAAGCAAACT CAGGCCACCC TGGCGCCCCT ATGGGCATGG CAGATATTGC TGAAGTGCTG TGGAATGATT TCCTTAAGCA CAATCCGAAC AATCCGAAAT GGGTAGATAG AGATCGTTTT ATCCTCTCTA ACGGTCACGG ATCTATGCTG ATCTACTCTT TATTACACCT GACTGGCTAC GACCTGCCTA TCGATGAACT GAAGCAATTC CGTCAGTTAC ATTCAAAAAC TCCGGGTCAC CCAGAATACG GCTACACCCC TGGTGTTGAA ACCACCACTG GCCCATTAGG GGCGGGGATC AGCAACGCTG TGGGTATGGC GATTGCAGAA AAAACCTTAG CGGCACAGTT CAACCGTGAA GGTCACGAGA TTGTTGACCA CTACACATAC TGCTTCCTCG GCGATGGCTG CTTGATGGAA GGTATTTCCC ACGAAGCTTG TTCTCTGGCT GGTACCTTAG GCCTAGGCAA ACTGATCGCA TTTTGGGATG ACAATGGCAT CTCTATCGAC GGTCATGTTG AAGGCTGGTT TACCGATGAC ACGCCAAAAC GTTTCGAATC ATACGGCTGG CATGTAATTG CTAACGTTGA TGGTCACGAT AGCGATGCGA TTCGCGCGGC TATCGAAGCG GCAAAAGCCG TGACCGACAA GCCAACCATG ATCTGCTGCA AAACCATTAT CGGTTTTGGT TCACCAAACA AATCTGGCAG CCACGATTGC CACGGCGCGC CATTAGGTGA TGCAGAAATC GCCGCGGCCC GTGAATTCTT AGGCTGGCCA CATGCGCCAT TCGAAATCCC TGCCGACGTA TACGCAGGTT GGGATGCTAA AGAAGCCGGT AACGCCCGTG AAGCGGCTTG GAACGACAAG TTTGCCGCTT ACGCTGCTGC TTACCCAGAA CTGGCTGCCG AATACGAGCG CCGTGTGCTG AAAGGTGAAT TACCAGCCGA TTTCGAAGCT AAAGCGCAAG CTTTTATCCA AGAATGCCAA GCGAAAGGCG AAGGTATTGC GAGCCGTAAA GCGTCACAAA ACGCGATTGC AGCCTTCGGT GCGGTTCTGC CTGAACTGTT AGGCGGCAGT GCTGACTTAG CGGGTTCTAA CCTGACCTTG TGGGCAGGTT CTAGAGGTAT TCAAGAAGAT CCAGCGGGTA ACTACGTGTA CTACGGTGTG CGTGAGTTTG GTATGAGCGG CATCATGAAC GGTGTGTCAC TCCACGGTGG TTTCATCAAC TACGGCGCGA CTTTCATGAT GTTCATGGAA TACGCACGTA ACGCAGTACG TATGTCTGCG CTGATGGGCA TTCAAAACAT CTTCGTTTAC ACCCATGACT CTATCGGTCA AGGTGAAGAT GGTCCAACTC ACCAACCCGT TGAGCAATTA GCTAACCTGC GCATGACACC AAACATGGCG GTATGGCGCC CATGTGACGC GGCTGAAACC GCAGTGGCTT GGAAAGCGGC TATCGAACGT CGTCATGCAC CAACATCGCT AGTATTCAGC CGTCAAAACC TGAAGGCTCA AGCACGTACA GCTGAGCAAT TAGCGAATGT GGCAAAAGGC GCTTATGTAC TGCAAGACTG TGCAGGTACG CCTGAGTACA TCCTGATTGC AACCGGTAGT GAAGTGCAAT TAGCGGTAGA AGCGGCGGCT GCGCTGACTG AACAAGGCAA ACAAATTCGC GTTGTTTCTA TGCCATCAAA CACTGAGTTT GATAAGCAAG ATGCCGCATA CAAAGAGTCT GTACTGCCAA AAGCTGTGAC TAAGCGTATT GCTATCGAAG CGGCCCATAC TGACTTCTGG TACAAGTATG TTGGTTTCGA AGGCACTGTT GTTGGCATGA CCACTTTTGG TGAGTCTGCG CCAGGTAACG TGCTGCTGAA GCACTTCGGT TTCACCGTTG AAAATGTGCT GAATGCTGCA AAATCACTAG GCTAA
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Protein sequence | MSSRKVLANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WNDFLKHNPN NPKWVDRDRF ILSNGHGSML IYSLLHLTGY DLPIDELKQF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI SNAVGMAIAE KTLAAQFNRE GHEIVDHYTY CFLGDGCLME GISHEACSLA GTLGLGKLIA FWDDNGISID GHVEGWFTDD TPKRFESYGW HVIANVDGHD SDAIRAAIEA AKAVTDKPTM ICCKTIIGFG SPNKSGSHDC HGAPLGDAEI AAAREFLGWP HAPFEIPADV YAGWDAKEAG NAREAAWNDK FAAYAAAYPE LAAEYERRVL KGELPADFEA KAQAFIQECQ AKGEGIASRK ASQNAIAAFG AVLPELLGGS ADLAGSNLTL WAGSRGIQED PAGNYVYYGV REFGMSGIMN GVSLHGGFIN YGATFMMFME YARNAVRMSA LMGIQNIFVY THDSIGQGED GPTHQPVEQL ANLRMTPNMA VWRPCDAAET AVAWKAAIER RHAPTSLVFS RQNLKAQART AEQLANVAKG AYVLQDCAGT PEYILIATGS EVQLAVEAAA ALTEQGKQIR VVSMPSNTEF DKQDAAYKES VLPKAVTKRI AIEAAHTDFW YKYVGFEGTV VGMTTFGESA PGNVLLKHFG FTVENVLNAA KSLG
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