Gene Shewana3_3353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3353 
Symbol 
ID4477654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4022623 
End bp4024617 
Gene Length1995 bp 
Protein Length664 aa 
Translation table11 
GC content51% 
IMG OID639727963 
Producttransketolase 
Protein accessionYP_870983 
Protein GI117921791 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0021] Transketolase 
TIGRFAM ID[TIGR00232] transketolase, bacterial and yeast 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.741116 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTCCC GTAAAGTACT CGCCAACGCA ATCCGTGCGT TAAGTATGGA TGCAGTTCAA 
AAAGCAAACT CAGGCCACCC TGGCGCCCCT ATGGGCATGG CAGATATTGC TGAAGTGCTG
TGGAATGATT TCCTTAAGCA CAATCCGAAC AATCCGAAAT GGGTAGATAG AGATCGTTTT
ATCCTCTCTA ACGGTCACGG ATCTATGCTG ATCTACTCTT TATTACACCT GACTGGCTAC
GACCTGCCTA TCGATGAACT GAAGCAATTC CGTCAGTTAC ATTCAAAAAC TCCGGGTCAC
CCAGAATACG GCTACACCCC TGGTGTTGAA ACCACCACTG GCCCATTAGG GGCGGGGATC
AGCAACGCTG TGGGTATGGC GATTGCAGAA AAAACCTTAG CGGCACAGTT CAACCGTGAA
GGTCACGAGA TTGTTGACCA CTACACATAC TGCTTCCTCG GCGATGGCTG CTTGATGGAA
GGTATTTCCC ACGAAGCTTG TTCTCTGGCT GGTACCTTAG GCCTAGGCAA ACTGATCGCA
TTTTGGGATG ACAATGGCAT CTCTATCGAC GGTCATGTTG AAGGCTGGTT TACCGATGAC
ACGCCAAAAC GTTTCGAATC ATACGGCTGG CATGTAATTG CTAACGTTGA TGGTCACGAT
AGCGATGCGA TTCGCGCGGC TATCGAAGCG GCAAAAGCCG TGACCGACAA GCCAACCATG
ATCTGCTGCA AAACCATTAT CGGTTTTGGT TCACCAAACA AATCTGGCAG CCACGATTGC
CACGGCGCGC CATTAGGTGA TGCAGAAATC GCCGCGGCCC GTGAATTCTT AGGCTGGCCA
CATGCGCCAT TCGAAATCCC TGCCGACGTA TACGCAGGTT GGGATGCTAA AGAAGCCGGT
AACGCCCGTG AAGCGGCTTG GAACGACAAG TTTGCCGCTT ACGCTGCTGC TTACCCAGAA
CTGGCTGCCG AATACGAGCG CCGTGTGCTG AAAGGTGAAT TACCAGCCGA TTTCGAAGCT
AAAGCGCAAG CTTTTATCCA AGAATGCCAA GCGAAAGGCG AAGGTATTGC GAGCCGTAAA
GCGTCACAAA ACGCGATTGC AGCCTTCGGT GCGGTTCTGC CTGAACTGTT AGGCGGCAGT
GCTGACTTAG CGGGTTCTAA CCTGACCTTG TGGGCAGGTT CTAGAGGTAT TCAAGAAGAT
CCAGCGGGTA ACTACGTGTA CTACGGTGTG CGTGAGTTTG GTATGAGCGG CATCATGAAC
GGTGTGTCAC TCCACGGTGG TTTCATCAAC TACGGCGCGA CTTTCATGAT GTTCATGGAA
TACGCACGTA ACGCAGTACG TATGTCTGCG CTGATGGGCA TTCAAAACAT CTTCGTTTAC
ACCCATGACT CTATCGGTCA AGGTGAAGAT GGTCCAACTC ACCAACCCGT TGAGCAATTA
GCTAACCTGC GCATGACACC AAACATGGCG GTATGGCGCC CATGTGACGC GGCTGAAACC
GCAGTGGCTT GGAAAGCGGC TATCGAACGT CGTCATGCAC CAACATCGCT AGTATTCAGC
CGTCAAAACC TGAAGGCTCA AGCACGTACA GCTGAGCAAT TAGCGAATGT GGCAAAAGGC
GCTTATGTAC TGCAAGACTG TGCAGGTACG CCTGAGTACA TCCTGATTGC AACCGGTAGT
GAAGTGCAAT TAGCGGTAGA AGCGGCGGCT GCGCTGACTG AACAAGGCAA ACAAATTCGC
GTTGTTTCTA TGCCATCAAA CACTGAGTTT GATAAGCAAG ATGCCGCATA CAAAGAGTCT
GTACTGCCAA AAGCTGTGAC TAAGCGTATT GCTATCGAAG CGGCCCATAC TGACTTCTGG
TACAAGTATG TTGGTTTCGA AGGCACTGTT GTTGGCATGA CCACTTTTGG TGAGTCTGCG
CCAGGTAACG TGCTGCTGAA GCACTTCGGT TTCACCGTTG AAAATGTGCT GAATGCTGCA
AAATCACTAG GCTAA
 
Protein sequence
MSSRKVLANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WNDFLKHNPN NPKWVDRDRF 
ILSNGHGSML IYSLLHLTGY DLPIDELKQF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI
SNAVGMAIAE KTLAAQFNRE GHEIVDHYTY CFLGDGCLME GISHEACSLA GTLGLGKLIA
FWDDNGISID GHVEGWFTDD TPKRFESYGW HVIANVDGHD SDAIRAAIEA AKAVTDKPTM
ICCKTIIGFG SPNKSGSHDC HGAPLGDAEI AAAREFLGWP HAPFEIPADV YAGWDAKEAG
NAREAAWNDK FAAYAAAYPE LAAEYERRVL KGELPADFEA KAQAFIQECQ AKGEGIASRK
ASQNAIAAFG AVLPELLGGS ADLAGSNLTL WAGSRGIQED PAGNYVYYGV REFGMSGIMN
GVSLHGGFIN YGATFMMFME YARNAVRMSA LMGIQNIFVY THDSIGQGED GPTHQPVEQL
ANLRMTPNMA VWRPCDAAET AVAWKAAIER RHAPTSLVFS RQNLKAQART AEQLANVAKG
AYVLQDCAGT PEYILIATGS EVQLAVEAAA ALTEQGKQIR VVSMPSNTEF DKQDAAYKES
VLPKAVTKRI AIEAAHTDFW YKYVGFEGTV VGMTTFGESA PGNVLLKHFG FTVENVLNAA
KSLG