Gene Shewana3_3352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3352 
Symbol 
ID4477653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand- 
Start bp4021478 
End bp4022494 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content50% 
IMG OID639727962 
Producterythrose 4-phosphate dehydrogenase 
Protein accessionYP_870982 
Protein GI117921790 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01532] D-erythrose-4-phosphate dehydrogenase
[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0432879 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGAG TCGCAATCAA TGGTTATGGT CGTATTGGCC GCTCAATCCT TCGCGCTTTA 
TATGAGTCCG GAAAACGTCA GCAAATACAA ATTGTCGCAA TCAACGAGTT GGCTAAGCCA 
GAAGCCATCA TTCATCTGAC CCAGTACGAT ACTACCCACG GTCGGTTTCA GCCCAGAGTC 
AAATTAGTCG ATGATCAGAT GCTGATCGGC GATGACGTCA TCAAAATTCT CCATGAACCG 
GATCCTGCTA AGTTGCCTTG GCGTGAGATG GACATCGACA TCGTCTATGA AGCGACTGGC 
GCCATCTTAG ATCGCAACAG CTGCGAGGCC CATATCCTCG CAGGCGCCAA ACAGGTCTTA 
ATCAGTCACC CTTCTTCTGC CGATGTTGAC GGCACTATCG TTTACGGTGT GAACCAAGAC 
TTACTGCGCG CCGAGCATAC TGTGGTCTCC AACGCCTCTT GTACAACCAA CTGTATCGTG 
CCCGTCATCG ACGTGCTGGA TAAACACTTT GGCGTGAAAA GTGGCGCGAT TACCACTATC 
CATTCGGCGA TGAACGATCA GCAAGTGATT GATGCCTATC ATGATGACTT ACGCCGCACC 
CGAGCTGCGG GTCAGTCCAT CATCCCCGTC GACACTAAAC TTGCCCGCGG TATCGAGCGG 
ATTTTGCCGC ACATGAAAGA CAAGTTTGAG GCGATTTCGG TGCGCGTTCC CACGATCAAC 
GTTACCGCTA TCGATCTTTC GGTAACATTA GATAAAACAG TGGATATTGC GACCGTCAAT 
CAAGTGTTAG AATTGGCCGC CAATGGACGA TTTAACGGTA TCTTAGGCTA TACTGATGAG 
CCGCTCGTAT CCTGTGATTT TAACCATGAT CCGCGCTCAA GTATTATCGA TGGCACCCAA 
ACTCGGGTGA GCGCAGGGCA GTTGGTTAAA CTGTTGCTGT GGTGCGATAA CGAGTGGGGC 
TTTGCAAATC GTATGCTAGA TACCAGTTTG GCGATGATTG CAGCTAAACA AAGCTGA
 
Protein sequence
MIRVAINGYG RIGRSILRAL YESGKRQQIQ IVAINELAKP EAIIHLTQYD TTHGRFQPRV 
KLVDDQMLIG DDVIKILHEP DPAKLPWREM DIDIVYEATG AILDRNSCEA HILAGAKQVL 
ISHPSSADVD GTIVYGVNQD LLRAEHTVVS NASCTTNCIV PVIDVLDKHF GVKSGAITTI 
HSAMNDQQVI DAYHDDLRRT RAAGQSIIPV DTKLARGIER ILPHMKDKFE AISVRVPTIN 
VTAIDLSVTL DKTVDIATVN QVLELAANGR FNGILGYTDE PLVSCDFNHD PRSSIIDGTQ 
TRVSAGQLVK LLLWCDNEWG FANRMLDTSL AMIAAKQS