| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3309 |
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| Symbol | rumB |
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| ID | 4477610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 3971082 |
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| End bp | 3972236 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639727919 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_870939 |
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| Protein GI | 117921747 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTACAT TAGTACAATG TGGGTATTTT GAACGAGGCC AATGCCAATC CTGTCGCCAT
ATTAAGCTCC CTATGGCGCA GCAACTGGCG GCCAAAAACC TAGAATTGCA GCAATTGTTA
GCGCCTTTTG TCGATAAGAC CGAACCGCAA TTTTTACCAC CGGTTGTGGG TGACAGCAGC
GGTTTTCGTA ACAAGGCGAA AATGGTCGCC TTGGGCGCAG CCCATGCGCC TGTGTTGGGG
ATTGTTAGTC CCAGCGGCGA AGCGGTGAGC CTGTGTGACT GCCTGTTGTA TCCTACTGAT
ATGCAAGCCT TACTCCACCG TTTAGAGCGC TTTGTACAGC AAGCGGGCAT TCCGCCTTAC
CGTGTCGATA AGGCCAAGGG CGAGCTTAAA TTTATCCTAC TGACGCGCAG CCAAGTGCGT
GGCGAGTATA TGTTGCGGTT TGTGCTGCGC TCGCGGGATG CCATCGCCCG TATCGAGCGT
GAATTGCCTA CGCTGATGGC CGAATATCCG CAGATCAAAG TCGTATCCGT CAATTTGCAA
CCTGTTCATA TGGCTATCTT GGAGGGTGAG GAGGAGATTT TCCTCACTGA AAATACTCGC
CTCGAAGAGC GCTTTAACGA TGTGCCTTTG TTTATTCGTC CCAAGAGCTT TTTTCAAACC
AATCCGCAGG TGGCGGCAAA GCTGTACCAA ACCGCCCGTG AGTGGGTGGC CGACTTCGCG
CCAGCTTCCC TTTGGGACTT ATTCTGTGGT GTGGGCGGCT TTGGTTTGCA CTGTGCAGCT
AAAGATATCC CACTGACAGG GATTGAAATT GAAGCCGAAG CCATTGCCTG CGCTAAGATG
TCGGCGCAGT TGATGGGATT GGATAAAGTA GAATTTATGG CGCTCGATTC CACCGACTTT
GCCAAGGGCG AGGCGGCGCA AACTAAGCCT GAGTTGATTA TTGTCAATCC ACCGCGCCGC
GGGATTGGTG AGTCCCTGTG CCATTCCTTA AGTGAGTTTG CGCCTAAGGC GATTTTGTAT
TCCAGCTGCA ATCCTAAAAC CTTAGCCAAA GATCTCGGCC ATATCCGTGG CTATCGGTTA
ACTAAGGTGC AGTTATTCGA TCTTTTTCCT CACTCTGATC ATTTCGAAGT GTTAGCCTTA
TTAGTCAAAG ACTAA
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| Protein sequence | MSTLVQCGYF ERGQCQSCRH IKLPMAQQLA AKNLELQQLL APFVDKTEPQ FLPPVVGDSS
GFRNKAKMVA LGAAHAPVLG IVSPSGEAVS LCDCLLYPTD MQALLHRLER FVQQAGIPPY
RVDKAKGELK FILLTRSQVR GEYMLRFVLR SRDAIARIER ELPTLMAEYP QIKVVSVNLQ
PVHMAILEGE EEIFLTENTR LEERFNDVPL FIRPKSFFQT NPQVAAKLYQ TAREWVADFA
PASLWDLFCG VGGFGLHCAA KDIPLTGIEI EAEAIACAKM SAQLMGLDKV EFMALDSTDF
AKGEAAQTKP ELIIVNPPRR GIGESLCHSL SEFAPKAILY SSCNPKTLAK DLGHIRGYRL
TKVQLFDLFP HSDHFEVLAL LVKD
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