| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3291 |
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| Symbol | |
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| ID | 4477400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 3939266 |
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| End bp | 3940843 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639727901 |
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| Product | rhomboid family protein |
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| Protein accession | YP_870921 |
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| Protein GI | 117921729 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGTGG CGTTAATCTT AAAAAAACTC CAGTTGATCT ATGTGCCCTT TATACTGCTC
TGCCTGCTAT TTGTCTCAGG CTACAGCTTG CTCCATTGGT TGTTGATTAT CGAGTTCCAA
CTGCTGAGGA TTGACGAATC GATTATCAAT TTCTGGCTGC CGCTGATATT GCCTTGGCCC
TTGCTGTTTT TCTATTTAAG GCCGAGGCTC AAGTTATTCC GCTTTACCAA GAGCAATAGC
CGTTTTATCT ATTTTGTGAT TGCCGTGCTT TTGCTGGCCG TGCCCACTAT CGTGGTGCAG
GAATACCTTA ATAGTGCAAC AGGCAAGTTG ACTCAACTTG AGTCCATCAA TGCACTATTA
CACCAGCCGC AAACTAAGTA TTACCAATTA AATCAGTTTT ATATTGATAA AAAACACATA
GGTGTGCAGC GTAATATTGA GCCCATAGGT AAGGGCAACA GTGAGCTGCG CATGAGCCTG
TATATTGCGA TGCCGATTTT CGCTAAACGT AATGAGAGTT GGCGGGTCGG TGCTAAGGCC
TTGGCATGGT ATGGCAAAGT TTATGAGAAA ACGATCAGTA ATCGACTCGA ACAGCAGGAG
AAAGAATCGC TATTTCAGGA GTTTATTCAT CAGAGTGAGC AGGAATTTAA TGCCTTAAAC
CCGGATGATT TTGTCTATCT GGACCGTATA GGCCCGTCAA GCCGCTACAC TCAGCTACTC
ACCGCTGCTC AAAAAAGCAC TGTCTACTTC GAGGGTTACC AAACCGTCTT AATGCCTGTG
AATCAACCCT TCGAGGCGCG TAATGGCCAT AAACTGGCGT GGATTATTGC TTGGTTAAGC
TTTGGGGCCA TTCTGTGGTT GTTGATGAGT CTGATGCTAA AACTGGATGA GACGCAGGCG
TCTAAGCCCA TGGCTGCACA GCTGAGTATG GAAAAACCTA AGGCAGAGCT CTATGGCTTT
TTGGCCGAAT TTAAACCTCG GCAGGGCTTT GTTATCACAC CTATCTTGCT CTATATCAAC
ACCTTGATAT TTGTATTGAT GGCCTTTGTC AGCCAGCACG TTATCGCCTT ACCAAACAGT
GTGTTACTCG ATTGGGGGGC TAACCTTCGG CAGTTGGTGC TTGAGCAACA AGTTTGGCGT
TTAATCAGCA ATGTGTTTTT GCACGGCGGC CTGATGCATT TGGTCTTTAA CTTATACGGG
CTGTTTTTTG CGGGGATGTT TTTGGAGCCA CTGCTGGGCA AATGGCGTTT ACTCTGGGTC
TATCTGTGCT GTGGTTTAGT GGCGAGTATG GCCAGCATAG GCTGGTATGA GGCGACGATC
AGCATAGGTG CCTCGGGCGC TATCATGGGG CTATTTGGGG TGTTGATCAT CTGGATATGG
TTGGGTTTAT TGCCCTTGGC GGACAATATG CCGCTCGCCC TGAATCTGAC CCTATTCGTT
ACTGCCAGTC TTGTGATGGG ACTCTTTGGC GGGGTGGATA ATGCCGCGCA CCTGGGTGGT
TTGGGCAGTG GGCTGCTGCT TGGGGGCTTG CTACGCCCAA ACAAGGTGCA GTCGCAGGCC
AATAAAAAGC CGAGGTAA
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| Protein sequence | MRVALILKKL QLIYVPFILL CLLFVSGYSL LHWLLIIEFQ LLRIDESIIN FWLPLILPWP
LLFFYLRPRL KLFRFTKSNS RFIYFVIAVL LLAVPTIVVQ EYLNSATGKL TQLESINALL
HQPQTKYYQL NQFYIDKKHI GVQRNIEPIG KGNSELRMSL YIAMPIFAKR NESWRVGAKA
LAWYGKVYEK TISNRLEQQE KESLFQEFIH QSEQEFNALN PDDFVYLDRI GPSSRYTQLL
TAAQKSTVYF EGYQTVLMPV NQPFEARNGH KLAWIIAWLS FGAILWLLMS LMLKLDETQA
SKPMAAQLSM EKPKAELYGF LAEFKPRQGF VITPILLYIN TLIFVLMAFV SQHVIALPNS
VLLDWGANLR QLVLEQQVWR LISNVFLHGG LMHLVFNLYG LFFAGMFLEP LLGKWRLLWV
YLCCGLVASM ASIGWYEATI SIGASGAIMG LFGVLIIWIW LGLLPLADNM PLALNLTLFV
TASLVMGLFG GVDNAAHLGG LGSGLLLGGL LRPNKVQSQA NKKPR
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