| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3279 |
|---|
| Symbol | |
|---|
| ID | 4477388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3918906 |
|---|
| End bp | 3920051 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639727889 |
|---|
| Product | transport system permease protein |
|---|
| Protein accession | YP_870909 |
|---|
| Protein GI | 117921717 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0609] ABC-type Fe3+-siderophore transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAGACA CACTTAAACT GGTGACCATG AATTTTTTTA GCCACATTTT TACGCCGCTC
ACGCGCCAGC AATGGCTGAT TTTAGGCTTG GCGGGCTTTG CCCTGCTCAC CCCCATCGCC
GCCGCGAGTT TTGGCGCGGC CAATATAAGC TTCTTAGATG TGTTGCAGGT GTTTATCAAT
AAACTCAGTC ACCTGTTTAT GGCCGATGAG GCCGTGAGCA CCAGCATGAC AGAGCGGATT
GTGATGGAGC TGCGACTGCC AAGGATTATA CTCGCCTTTG TGGCGGGGGC GGGGCTGTCC
TTGGCGGGGA GCGTGCTGCA AACCGTGACT CGCAACCCCC TTGCCGATCC TTATCTGTTC
GGCATTAGCT CCGGCGCCTC CTTTGGTGCC GTGGTCATGC TGACGCTATT CACAGGTTCT
GGCCTGTTTG GCAATGCGGG CACGATAGCC AACTCGGGGA TTTTTAGCGG TTCAGGGACT
TTTGCTGGGC TCTTGTGGTT TAGCTTACCC TTCGGCGCCT TTATTGGTGC CAGTCTGTCG
GTGCTAATCG TGCTGGCGTT AGCTGGGTTA GGCCTTAAGA GTCAGGTGGA GCGCATGTTG
CTCTCTGGCG TGGCGACCTC CTTTATGTTT AGCGCCTTAA CCAGTTTATT GCTGTACTTT
GCCAGCCCGC AGGCTACCGC ATCGGTATTG TTTTGGAGTC TTGGCAGTTT TGCTAAGGCC
AGTTGGTCGC TGTTGGTGCT GCCGTCTTTA GTGGTGCTGC TGAGCTTTTT TATTATCCTC
GGTTGGAAAC GCCAAATCAT GGCCCTGCAA GCGGGGGATG AAACGGCCCA CACCTTAGGG
GTGAATGTGC CTAAGCTGCG CCTCAATATG TTGCTGCTCT GCTCGCTTAT CACCGCAATT
TTAGTGGCGA CCTGTGGCGG CATTGGCTTT GTCGGCTTGA TGATCCCGCA CACAGTTCGT
TTGTTATTCC CCGGTCGTCA GCCCATCTTA CTGACGGCGC TGGTGGGCGG GCTGTTTATG
GTGTGGATTG ATGTACTCGC CCGATGTTTG CTTGGCAATC AGGAATTACC CGTGGGGATT
ATTACCGCTG CGATCGGTAG CTTCTTCTTT TTGCTGATTT TGCGTCGGCG CAAGCTATCG
AATTAG
|
|---|
| Protein sequence | MIDTLKLVTM NFFSHIFTPL TRQQWLILGL AGFALLTPIA AASFGAANIS FLDVLQVFIN
KLSHLFMADE AVSTSMTERI VMELRLPRII LAFVAGAGLS LAGSVLQTVT RNPLADPYLF
GISSGASFGA VVMLTLFTGS GLFGNAGTIA NSGIFSGSGT FAGLLWFSLP FGAFIGASLS
VLIVLALAGL GLKSQVERML LSGVATSFMF SALTSLLLYF ASPQATASVL FWSLGSFAKA
SWSLLVLPSL VVLLSFFIIL GWKRQIMALQ AGDETAHTLG VNVPKLRLNM LLLCSLITAI
LVATCGGIGF VGLMIPHTVR LLFPGRQPIL LTALVGGLFM VWIDVLARCL LGNQELPVGI
ITAAIGSFFF LLILRRRKLS N
|
|---|
| |