| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3275 |
|---|
| Symbol | |
|---|
| ID | 4477384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3914494 |
|---|
| End bp | 3916119 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639727885 |
|---|
| Product | cobyric acid synthase |
|---|
| Protein accession | YP_870905 |
|---|
| Protein GI | 117921713 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1492] Cobyric acid synthase |
|---|
| TIGRFAM ID | [TIGR00313] cobyric acid synthase CobQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAA ATAACGCCTC TAATCCTACT TCGGCCTTGT CGCAAAACCT GTTTCAAGGT
GTTGTAAGCC AAAGTGAAGC TCAGCATTCG GGCGCAAAAG TGCTAATGGT GCAGGGGACT
ACCTCGGATG CGGGCAAAAG TACGCTAGTG GCGGGGATTT GTCGATTGCT CGCCCGTGAG
GGCGTTAAGG TCGCGCCTTT TAAGCCACAG AATATGGCGC TTAACAGCGC AGTCACCATT
GATGGCGGGG AGATTGGCCG CGCTCAGGCA CTGCAAGCCG CAGCCTGTTT TCTCGCGCCG
CACACGGATT TTAATCCCAT CCTGCTTAAG CCAAGTTCGG ACACGGGCGC GCAGATCATT
GTGCACGGCA AAGCCTTGAC CACCTTAGAG GCCTCGGCCT TTTTCGGGGA AAAATCTAAG
GATTATAAAG CCATGGCGCT AAATGCCGTG CTGGAATCCT TTGCGCGTTT AGGTCAGCAA
TACCAAACGA TTGTGGTTGA AGGGGCGGGG AGCCCGGCGG AAATTAATCT ACGCGAAGGG
GATATCGCCA ATATGGGCTT TGCCGAGGCG GTCGACTGCC CAGTGATCAT TATTGCCGAC
ATCGATAAAG GCGGGGTGTT TGCCCATTTG GTGGGTACCT TAGCGCTATT GTCGCCCTCC
GAGCAAGCTA GGGTAAAAGG CTTTGTTATC AATCGCTTTC GAGGCGATAT CAGCCTATTG
CAGTCTGGTC TCGATTGGCT AGAGGCCCAT ACGCAAAAGC CTGTGTTGGG CGTGTTGCCC
TATTTGCATG ATTTGCATTT AGACGCCGAG GATGCACTTA TCGAGTCGCC CACTAAGCAG
GCACAAAGCC GTTTTAAGGT GCGGGTATTA GTGTATCCCC GCACCAGTAA TCATACGGAT
TTTGACCCGC TTAGACTGCA CCCCGATATC GATTTTGATT ATGTCTCGCT CCAGACTCAG
GCCTCTGCCC AGACGCAGGA GATTGTGGCC GATCTGCTGA TTTTACCCGG CAGTAAGAAT
GTCCGAGCAG ACTTGGCTTT TTTGCGTGAG CAGGGCTGGG ATAAACAAAT TGCCAAGCAT
CTACGCTACG GCGGTAAGCT GCTGGGGATT TGCGGCGGCT ATCAAATGTT GGGTGAAAGC
ATTGCCGATC CCATGGGGAT TGAAGACACG CTCGGCGTGA GCCAAGGGCT CGGATATTTA
CCCATTACCA CCGAATTTAA GGCTGAAAAA CAGCTACGTA GGGTCACTGG CCATTTAGCG
CTGCAAGGGC AACAAGTAGA GGTGAAGGGC TATGAGATCC ACTGCGGTGA GTCCCAATAT
CTCACGTCCA GTGATGCCGC CAAGAGTGCG CCATTACGCT TGAAAAGTGA GAGTGCTTGC
GATCAACAGG CAGAAAAGCC TTTTGCCGAT GGCTGTTTAA GTGACGACGG GCAAGTGCTC
GGCAGCTATT TACATGGGCT ATTCGACAGC CCAGAGGCCT GCCAGCTCGT CCTTCACTGG
GCTGGGTTGG AAAATGCTCA AGCGATTGAT ATCAATGATA TTCGCGAACA ACAGTTGGAT
CGCTTGGCCG ACGTATTAGC CGAGCACCTC GATATGCAAA AGCTCGCATC CATTATAAAT
GCATAA
|
|---|
| Protein sequence | MNSNNASNPT SALSQNLFQG VVSQSEAQHS GAKVLMVQGT TSDAGKSTLV AGICRLLARE
GVKVAPFKPQ NMALNSAVTI DGGEIGRAQA LQAAACFLAP HTDFNPILLK PSSDTGAQII
VHGKALTTLE ASAFFGEKSK DYKAMALNAV LESFARLGQQ YQTIVVEGAG SPAEINLREG
DIANMGFAEA VDCPVIIIAD IDKGGVFAHL VGTLALLSPS EQARVKGFVI NRFRGDISLL
QSGLDWLEAH TQKPVLGVLP YLHDLHLDAE DALIESPTKQ AQSRFKVRVL VYPRTSNHTD
FDPLRLHPDI DFDYVSLQTQ ASAQTQEIVA DLLILPGSKN VRADLAFLRE QGWDKQIAKH
LRYGGKLLGI CGGYQMLGES IADPMGIEDT LGVSQGLGYL PITTEFKAEK QLRRVTGHLA
LQGQQVEVKG YEIHCGESQY LTSSDAAKSA PLRLKSESAC DQQAEKPFAD GCLSDDGQVL
GSYLHGLFDS PEACQLVLHW AGLENAQAID INDIREQQLD RLADVLAEHL DMQKLASIIN
A
|
|---|
| |