| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3225 |
|---|
| Symbol | |
|---|
| ID | 4477317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3866794 |
|---|
| End bp | 3868344 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639727835 |
|---|
| Product | peptidase S10, serine carboxypeptidase |
|---|
| Protein accession | YP_870855 |
|---|
| Protein GI | 117921663 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2939] Carboxypeptidase C (cathepsin A) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.343617 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGCGC TAACAGAGAA GCAAACGCCC TCAAGGCTGA AATGGGCAAG TGTGTTGCTG
CCCTTGTTAT TCACTGTGTC CATAGTCGGT CATGCAGAGC CCGCCCAAAA AAGCGAAGCC
AAAGTGGATA AGCTAGTGCC AGAGGTGGTG ACGACTAAGC ACCGAATGAC GATTCAAAAT
CAAAAGATCA GCTATCAAGC CATTAGTGGA GAAACCATTT TAGAGGATGA TAAGGGTGAG
CCTCAGGCGA GTATCTTCTC TATTACGTAT TTACGGGATG ATGTGCAAGA CAGCAGTAAA
CGCCCTGTCA CGTTTATTTT CAACGGAGGC CCAGGTTCTG CCTCGCTGTG GCTGCACATG
GGACTCTTTG GGCCAAAGCG TGTAATTGTA CCAGGTGATG CCAAAGATGA TGGTGCGGCG
CCTTATCGGA TAGAGGCCAA CGATTACTCC TTACTCGATG AGTCTGATTT AGTGTTTATC
GACCCTGTGG GTACTGGTTT TAGCCGTGCG CTTGGTGAGA AGAAAGGTGC CGATTTTTGG
GGCGTGAAAG AAGATGCCCA ATCCATTGCC GAGTTTATGC GCCGTTGGTT GATTGAACAT
AAGCGTTGGA ATTCGCCCAA ATATCTTGCT GGTGAAAGTT ATGGTACGAC ACGAGCCGCA
GCATTAGTGG ATGAGCTTCA AGGCGGTTGG ACCGATATCT CGGTCAATGG CGTGATGCTG
ATTTCATCGA TTCTCGACTT TAGCCACGCT CGCTATCAAC CGGGTAATAA CCAACCCTAC
ATTGGTTTTT TACCGACTAT GGCGGCAACT GCGTTTTATC ACAATAAAGT CAACGATGCT
GACAAGGCCT TAGGGCTCGA AGCGTTTGTC GAACAGGCGC GTCAATTCGC TATCAAGGAT
TACGCCTTAG CCCTATTACA GGGTAGCCGT TTAGCGCAAA GCGATTATCA GAGCGTACGT
AAACAGTTGG CGCGTTTTAC GGGCCTGAGT GAGTCTTATC TTGACCGAGT GAATTTGCGG
GTGAGTGCGA GTCGCTACAC CAAAGAATTG CTCAGGGATC AGGATTTGAC CGTCGGGCGG
TTAGACAGTC GCTATACCGG CAAAGATTAC GACAGTGGTG GTGACTCGAC CGATAACGAC
CCGTCAGGAT ATGGTATCGA TGGCGCTTAT ACGGCGGCTA TCCATCAGTA TCTGTATGAG
GATTTAGGGG TTAAATTATC ACGCCCCTTC AACGTGCTCT CCACCGATGT TAACCGTGGC
TGGAATTGGA ATATCAGCGG TAAGCAAATG CATTATGTGA ATGTGGCGCC CTATTTAGGG
CAAGCGCAGC GCGAGAATAA AGACCTACGC ATTTTTGTCG GTAACGGTTA TTTCGATTTT
GCGACGCCCT TCTTTGCGAC CGAAAATACC TTTGCCGATA ATGGCATAGA TAATAGCCGT
GTCACTATGC ACTACTACAA AGCGGGTCAT ATGATGTATG TGGAGCCCGC GTCGCTTGCA
CAACTGGTGC AAGATATCCG CGCTTTTTAT CATCCTAACG CGGCTAAATG A
|
|---|
| Protein sequence | MRALTEKQTP SRLKWASVLL PLLFTVSIVG HAEPAQKSEA KVDKLVPEVV TTKHRMTIQN
QKISYQAISG ETILEDDKGE PQASIFSITY LRDDVQDSSK RPVTFIFNGG PGSASLWLHM
GLFGPKRVIV PGDAKDDGAA PYRIEANDYS LLDESDLVFI DPVGTGFSRA LGEKKGADFW
GVKEDAQSIA EFMRRWLIEH KRWNSPKYLA GESYGTTRAA ALVDELQGGW TDISVNGVML
ISSILDFSHA RYQPGNNQPY IGFLPTMAAT AFYHNKVNDA DKALGLEAFV EQARQFAIKD
YALALLQGSR LAQSDYQSVR KQLARFTGLS ESYLDRVNLR VSASRYTKEL LRDQDLTVGR
LDSRYTGKDY DSGGDSTDND PSGYGIDGAY TAAIHQYLYE DLGVKLSRPF NVLSTDVNRG
WNWNISGKQM HYVNVAPYLG QAQRENKDLR IFVGNGYFDF ATPFFATENT FADNGIDNSR
VTMHYYKAGH MMYVEPASLA QLVQDIRAFY HPNAAK
|
|---|
| |