| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3221 |
|---|
| Symbol | |
|---|
| ID | 4477313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3863883 |
|---|
| End bp | 3864548 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639727831 |
|---|
| Product | uracil-DNA glycosylase |
|---|
| Protein accession | YP_870851 |
|---|
| Protein GI | 117921659 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0692] Uracil DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00628] uracil-DNA glycosylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00088309 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTGTGG CAACTTGGCA GGAATTTATC GATTATCAAC GTGCTCAACC CTATTACCAG
CAGTTGATTG CATTTGTGAA TCAAGAGCGT GCGTCGGGTA AGGTGATCTA TCCCCCCAAG
GAGGATGTGT TCAACGCCTT TAAGACAACT CCTTTGGAAA AGGTGCGTGT GGTACTTATC
GGTCAAGATC CCTACCATGG TCCCGACCAA GCCCACGGCC TGTGTTTCTC GGTTAAGCGA
GGCATTAAAC CGCCGCCATC GCTGGCCAAT ATGTATAAAG AGTTAGTGAA CGATATTCCC
GGTTTTCAAA TCCCTAACCA TGGCGATTTA ACTCAATGGG CAGAGCAGGG GATCTTAATG
CTCAATACCG TGCTGACGGT GGAGCAAGGA CAAGCTCATT CCCACGCTAA TGCGGGCTGG
GAAACCTTTA CCACTGAGGC GTTAAAGCTG CTTAATGCGC AGGAGCAGCC GATTATTTTT
GTACTATGGG GCAGCCATGC CATCAAAAAA GGGGCGGTGA TTACTGCGCC ACAGCATCAA
ATACTGTCGG GACCCCATCC GTCACCGCTG TCAGCTTATC GCGGCTTCTT TGGTTGTGGG
CATTTTTCTA AAGTGAACCA ACTGCTGATG GCAAGGGGCG AAGTACCGAT CCAATGGCAG
GTTTAA
|
|---|
| Protein sequence | MTVATWQEFI DYQRAQPYYQ QLIAFVNQER ASGKVIYPPK EDVFNAFKTT PLEKVRVVLI
GQDPYHGPDQ AHGLCFSVKR GIKPPPSLAN MYKELVNDIP GFQIPNHGDL TQWAEQGILM
LNTVLTVEQG QAHSHANAGW ETFTTEALKL LNAQEQPIIF VLWGSHAIKK GAVITAPQHQ
ILSGPHPSPL SAYRGFFGCG HFSKVNQLLM ARGEVPIQWQ V
|
|---|
| |