| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3193 |
|---|
| Symbol | |
|---|
| ID | 4478256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3831240 |
|---|
| End bp | 3832385 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639727803 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_870823 |
|---|
| Protein GI | 117921631 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.252667 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAC TACTGATATT AACCTACGCC TCGATCTGCA TTGTGATTTT TAAAGTGTTT
AAGATCCCAA TGAATAAATG GACAGTGCCG ACCGCCGTAT TAGGAGGCGT AGTGTTGATT
GGGGCGCTGC TACTTATCAT GAACTACAAC CATCCCTATT CCCGTTTCGC ACGGGAATAC
TATGTCACTA TCCCGATTAC ACCTGCGGTA AAAGGTTTAG TGATTTCGGT GGAAGCTAAG
CCAAATACGC CGATGAAACA AGGGGATGTG CTATTTCGAA TCGACCCAAC ACCCTTTGAG
GCCGTGGTAA AACGTAAAAA AGCGGCGTTG TTAGCGGCGG AGCAGGAAGT GCCACAACTT
GCGGCCGCTT GGGAGGCAGC CAAGGCGAAT GTGGCCAGAG TGGCTGCCGA CAGGGAACGC
AATAAATCGG CCTATGATCG CTATGAGCAA GGCCATCGTA AAGGTGGGGC AAACTCTCCC
TTCACTGCGC TGGAATTAGA TAATCGACGC CAACTGTTTT TTGCCTCAGA GGCTCAGCTA
ACGGCTGCGC AGGCCGAAGA GTTACGCGCA CGTCTTGCCT ATGAGTCCAA TGTGGATGGG
GTAAATTCGA AGGTCGCTGG GCTTCAGGGG GATCTTGAAA GCGCGCTCTA TAATCTCGAG
CAAACCGTAG TACGGGCACC CGCCGATGGT ATTGTTACCC AAATGGCGCT GCGCCCAGGT
GCAATGGCGG TGCCTTTACC TTTACGGCCA GTGATGAGTT TTATTCCCGA TGAGCAGCGT
TATTTTGCTG GCGCATTCTG GCAAAACTCC CTGCTGCGAT TACAGGAAGG GGATGAGGCA
GAGGTGGTAT TAGATGCGGC GCCCGGACAA GTGTTTAAGG GCAAAGTCGC TAAGGTACTC
CCCGCGATGG CCGAGGGGGA GATTCAGATG AATGGTACGC TGCAATCGTC TAATCAATTG
TTCCAAAGTG GCCGGGTTAT CGTATTAATC GATATTGAAG ATGATGCGAT ACGCCGTCAA
TTCCCGGCGG GCGTTGCGGG ACAAGTGGCT GTGTACACTG AACATTTCCA TCATGTGGCC
GTGATGCGCA AAGTGCTGCT GCGGATGCAG GGCTGGCTAA ACTATCTGTT CTTCGATGGG
CACTAG
|
|---|
| Protein sequence | MDLLLILTYA SICIVIFKVF KIPMNKWTVP TAVLGGVVLI GALLLIMNYN HPYSRFAREY
YVTIPITPAV KGLVISVEAK PNTPMKQGDV LFRIDPTPFE AVVKRKKAAL LAAEQEVPQL
AAAWEAAKAN VARVAADRER NKSAYDRYEQ GHRKGGANSP FTALELDNRR QLFFASEAQL
TAAQAEELRA RLAYESNVDG VNSKVAGLQG DLESALYNLE QTVVRAPADG IVTQMALRPG
AMAVPLPLRP VMSFIPDEQR YFAGAFWQNS LLRLQEGDEA EVVLDAAPGQ VFKGKVAKVL
PAMAEGEIQM NGTLQSSNQL FQSGRVIVLI DIEDDAIRRQ FPAGVAGQVA VYTEHFHHVA
VMRKVLLRMQ GWLNYLFFDG H
|
|---|
| |