| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3161 |
|---|
| Symbol | |
|---|
| ID | 4477755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3790746 |
|---|
| End bp | 3793595 |
|---|
| Gene Length | 2850 bp |
|---|
| Protein Length | 949 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639727765 |
|---|
| Product | peptidase M16 domain-containing protein |
|---|
| Protein accession | YP_870791 |
|---|
| Protein GI | 117921599 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0612] Predicted Zn-dependent peptidases |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAGG GGAATACCTT GAAAAAATGG ATATTAGCGG TCGCGATCTC CGCCGCACTC
GCAGGTTGTG CCAGCCAAAC CTCAACTCAA TTACCCGCGG GTGTAAAGTT AATTGAAAAT
GTGCAACTGA AGGACTCTGA AGTTGGTATT CCCTTTAAAA AATATCAGCT TGCCAATGGT
CTAACGGTTA TTTTGCATCA AGATCATTCC GATCCCTTAG TGCATGTCGA TGTGACTTAT
CACGTCGGCT CGGCCAGAGA ACTTGCTGGC CGTTCAGGCT TCGCCCATTT ATTCGAACAT
ATGATGTTCC AGGGCTCTGA GCACGTCGCC GATGAGCAAC ATTTTGAGGT GGTGACCGAG
GCGGGGGGCA CGCTAAACGG CTCTACCAAT ACCGACAGAA CCAACTACTT TGAGACAGTC
CCTAGCAACC AGCTCGAAAA AATGTTGTGG CTCGAGTCTG ACCGTATGGG CTTTTTGTTG
CCGGCGCTGA CCAGCGAGAA GTTTGAAGTA CAGCGCGAGA CAGTGAAAAA CGAGCGTGCT
CAACGCATTG ATAATCAACC CTATGGCCGA ATGAGCGAGC GCTTTAATCA GGCGATGTTC
CCGGTCGGTC ATCCCTATTC TTGGCCTGTG ATCGGCTGGC CAGAGGATCT TAACCGCGCC
ACAGTGGATG ATGTGAAACA CTTTTTCCAG CGTTGGTACG GCCCGAATAA CGCCACTCTG
ACCATTGGCG GCGATTTTGA TGAACTACAA GCCTTAGCCT GGGTAAACAA ATACTTTGGC
GAAATCCCCC GTGGCCCCGA GGTTCAGCCA GAGCCCAAGA CGTTAGTCAC GCTCGATAAG
ACGCGCTATA TCTCAATGGA AGATAACGTG CATTTACCGC TGATCCGTAT CGGCTTTCCG
ACTGTGTATG CCAGCCATCC CGATGAAGCC GCGCTGGACT TATTAGCCAA TATCCTCGGT
GGCGGTAAAA CCTCACTCGT TTACAAAAAC TTGGTTAAGG ATGGTTATGC AGTACAGGCA
AGCGTGAGCC AACCCTGCCA AGAGTTAGCC TGTCAGATGT CGATTTATGC CTTAGCCAAT
CCGCAAAAAG GCGCGACCTT AGCCGAACTT GAGCAGCGTA TTCTCGACTC GATTAATGAG
TTTGAGCAGC GCGGCGTCAC CGACGATGAC CTGCAAAAAG TGAAAGTGCA GTTTGAGGCC
GATACCATTT TTGGCCTGCA GAGCGTAAAA GGCAAAGTGT CTATGCTTGC CTTGAATCAA
ACCATGTTTG GTGAGCCGAA TAAGATTGCA GTAGACCTTG CGCGCTACGC CAATGTGACC
AAAGACGATG TGATGCGGGT ATTTAAAAAG TACATCAAAG ACAAGCCCAT GGTGGTGATG
AGTGTGGTGC CACAGGGAAT GACGGCTTTA GTCGCTCATC CGGATAACTT CACCCCTCAA
ACCTTGCCCG TGGCGTATAC GGCTGTAGAG GGGGATTTAC CCGCCGCTAA GTTAGTGTCA
AGTTTCGACC GTTCCAAAAT GCCTGCCTCG GGCGCGGCGC CCGTGCTAAA AGTCCCGACG
ATTTGGACCA CTAAGTTAGC CAATGGCATC GAAGTGATGG GCACTCAAAG CAGCGAAACT
CCAACAGTAG AGTTAGTGAT TTATCTTAAC GGCGGACACA GATTAGTGCC CGTTGAAAAG
GCGGGCCTGG CAAGCTTAAC CGCTGAGATG CTAAATGAGT CGACTCAAAA GCGCTCAACC
GAGCAGTTGT CGCAGGCGCT TGAGATGCTC GGCAGTACGG TGGACTTTAG TGCCTCCGAA
TCCCAAAGTA CGATTAAGGT GTCGGCGCTT ACCGAGCACT TGGATGAAAC CTTAGCCATT
TTAGAAGAAA AGCTGTTCCA ACCTGCGTTT AACGAGGCCG ACTTTGCACG GGTGAAGCAA
CAACAGTTGC AGCAAATTCA GCATATGCAG TCAGATCCAG GCTATGTCGC TAACTCTGCG
TTGTATAGCT TGCTCTATGG TAAGAATAAC GCTCAAGGCG TGAGTGATGC GGGGACCTTA
GATTCCGTTG CTGCGCTGAC TCTTGCGGAT GTGAAGGCGT TTTATGCTGA ACAGTACCGT
GGGGCAAACG CTAAAATCAT TACGGTAGCG GATCTGCCTG AAAGTGCATT GCTACCTAAG
CTCGCGGGAT TGAGTCAATG GCAAGGGGAG GCGAGTAGAT TGCCGCCACT CAAGTCATTC
CCTGCACTGA AGGGCGGGAC TATCTATCTT ATCGATAAAC CGGGCGCCGC TCAGTCGGTG
ATTAACATTG CGAAACGTGC CTTACCCTAT GATGCAACAG GTAATTATTT TAAATCTTAC
CTTATGAACT ATCCGCTTGG TGGTGCCTTC AATAGCCGTA TTAACCTCAA TCTACGTGAG
AACAAGGGGT ATACCTATGG GGCTCGCAGT TCATTTACCG GTGGCGTCGA AGTCGGTGAC
TTTGTGGCCT CGAGTGATGT GCGTACCGAT GTGACGGCTA AGGCGGTAAA TGAATTTATC
AAAGAGATCA AAGTCTATCA GCAGAATGGG ATGACAGACA CTGAGCTCGG CTTCATGCGT
AACTCGGTTT CCCAAGGGCA AGCATTGGAT TATGAGACGC CTTATCAGAA GGCGGGTTTT
ATGCGGATGA TCCAGCGTTA CCAGCTGAGC CAAGATTTTA CTACCGAGCA GGACAAAATT
ATAAATACTG TAACAAAAGA TGAACTCAAT GCCCTCGCGG CTTCCGAGCT AGATATCTCG
AAAATGATCA TCTTAGTTGT CGGGGATAAG GCGAAAATTG AAGCGGATTT AGCAACTTTA
GGCTATCCAA TTGAAACTTT AGTATTGTAA
|
|---|
| Protein sequence | MYKGNTLKKW ILAVAISAAL AGCASQTSTQ LPAGVKLIEN VQLKDSEVGI PFKKYQLANG
LTVILHQDHS DPLVHVDVTY HVGSARELAG RSGFAHLFEH MMFQGSEHVA DEQHFEVVTE
AGGTLNGSTN TDRTNYFETV PSNQLEKMLW LESDRMGFLL PALTSEKFEV QRETVKNERA
QRIDNQPYGR MSERFNQAMF PVGHPYSWPV IGWPEDLNRA TVDDVKHFFQ RWYGPNNATL
TIGGDFDELQ ALAWVNKYFG EIPRGPEVQP EPKTLVTLDK TRYISMEDNV HLPLIRIGFP
TVYASHPDEA ALDLLANILG GGKTSLVYKN LVKDGYAVQA SVSQPCQELA CQMSIYALAN
PQKGATLAEL EQRILDSINE FEQRGVTDDD LQKVKVQFEA DTIFGLQSVK GKVSMLALNQ
TMFGEPNKIA VDLARYANVT KDDVMRVFKK YIKDKPMVVM SVVPQGMTAL VAHPDNFTPQ
TLPVAYTAVE GDLPAAKLVS SFDRSKMPAS GAAPVLKVPT IWTTKLANGI EVMGTQSSET
PTVELVIYLN GGHRLVPVEK AGLASLTAEM LNESTQKRST EQLSQALEML GSTVDFSASE
SQSTIKVSAL TEHLDETLAI LEEKLFQPAF NEADFARVKQ QQLQQIQHMQ SDPGYVANSA
LYSLLYGKNN AQGVSDAGTL DSVAALTLAD VKAFYAEQYR GANAKIITVA DLPESALLPK
LAGLSQWQGE ASRLPPLKSF PALKGGTIYL IDKPGAAQSV INIAKRALPY DATGNYFKSY
LMNYPLGGAF NSRINLNLRE NKGYTYGARS SFTGGVEVGD FVASSDVRTD VTAKAVNEFI
KEIKVYQQNG MTDTELGFMR NSVSQGQALD YETPYQKAGF MRMIQRYQLS QDFTTEQDKI
INTVTKDELN ALAASELDIS KMIILVVGDK AKIEADLATL GYPIETLVL
|
|---|
| |