Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3097 |
Symbol | |
ID | 4477813 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 3715037 |
End bp | 3716200 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 639727701 |
Product | extracellular solute-binding protein |
Protein accession | YP_870727 |
Protein GI | 117921535 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0218628 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGTCGGTG ACACAATTTC AGAATTGTTA AAGGCAATTC TGCTACCCGA GAAAGGAGAA AGCATGAAGC TATTTAATAA GATGACGACT TTGGCTTTAG TAACCGCGGG CGCCCTCGCA AGCGTTGCTG CCCAAGCTGA AGAAGTAGTG CGCGTATATA ACTGGTCTGA TTATATCGCG GAAGATACCT TAGAAAACTT CAAGAAAGAA ACGGGCATTC GGGTGATTTA CGATGTGTTT GATAGTAACG AAGTGCTGGA AGCCAAGTTA CTGTCTGGCC GCAGTGGTTA CGACATCGTG GTTCCATCTA ACCATTTCCT CGCTAAACAA ATTAAGGCTG GCGCATTCAA GCCGCTAGAC CGCTCTAAAC TCAGCAACTT TAAAAACCTC AACGCCGATC TAATGAAACA GTTAGAGAAG GCTGATCCGG GTAACCAATA TGCCGTACCT TACCTCTGGG GTACCAATGG TATCGGTTAC AACATCGATA AAGTGAAAGC CGCAGTGGGT GAAGATGCGC CATTTGATTC TATGGAGCTG ATCTTTAACC CAAAATATGC TGAAAAAATC TCTAAGTGTG GCTTTGCTAT GCTGGATTCG GCCGATGATA TGGTGCCACA GGCGATGATC TACTTAGGTC TTGACCCAAA TAGCACGAAA GCCGAAGACT ATGAAAAAGC AGGTGAATTA CTCGAAAAAA TTCGCCCTTA CGTGACTTAT TTCCATTCAT CACGCTATAT CTCTGATCTC GCGAATGGCG ATATCTGTGT GGCATTTGGC TTCTCGGGTG ACGTATTCCA AGCTGCGGCC CGTGCCGATG AAGCGGGTAA CGGTAACAAG ATTGGTTACT CGATTCCAAA AGAAGGCGCG AACCTGTGGT TCGATATGTT AGCTATCCCT GCGGATGCGG CTAACGTTGA AAATGCTCAC AAACTTATCA ACTACTTACT TCGTCCTGAA GTGATTGCGC CTATCTCTAA CTATGTGGCT TATGCTAACC CTAACGACCC AGCACAGCCT TTAGTTGATG AAGCGATTCG CAATGACCCT GCGATTTATC CACCAAAAGA AGTGTTAGAT AAATTGTATA TTGGCGAAAT CCGTCCATTG AAAATCCAAC GTGTATTAAC CCGCGTCTGG ACCAAAGTGA AGTCTGGCCA ATAA
|
Protein sequence | MVGDTISELL KAILLPEKGE SMKLFNKMTT LALVTAGALA SVAAQAEEVV RVYNWSDYIA EDTLENFKKE TGIRVIYDVF DSNEVLEAKL LSGRSGYDIV VPSNHFLAKQ IKAGAFKPLD RSKLSNFKNL NADLMKQLEK ADPGNQYAVP YLWGTNGIGY NIDKVKAAVG EDAPFDSMEL IFNPKYAEKI SKCGFAMLDS ADDMVPQAMI YLGLDPNSTK AEDYEKAGEL LEKIRPYVTY FHSSRYISDL ANGDICVAFG FSGDVFQAAA RADEAGNGNK IGYSIPKEGA NLWFDMLAIP ADAANVENAH KLINYLLRPE VIAPISNYVA YANPNDPAQP LVDEAIRNDP AIYPPKEVLD KLYIGEIRPL KIQRVLTRVW TKVKSGQ
|
| |