Gene Shewana3_3094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3094 
Symbol 
ID4477810 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp3712027 
End bp3712842 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content50% 
IMG OID639727698 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_870724 
Protein GI117921532 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1177] ABC-type spermidine/putrescine transport system, permease component II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.051909 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGC TGAGTTTTTC TTCGGTGATG CTGTGGTTCG GCTTGTTCTT CTTGTACGCA 
CCTATGCTGA TCCTAGTGAT TTATTCGTTC AACGAATCTA AGTTAGTGAC AGTGTGGGGC
GGGTTTTCAC CTAAATGGTA CGGCGAGTTA TTTGCCGATC AGCAAATTCT CGATGCGGTG
TGGACCAGCC TTCGGATTGC GTTTTACAGC TCAACCATGG CGGTGATTAT CGGCACTATG
GCCGCCTTTG TGATGACGCG GTTTAAGCGC TCCTGGGCCA AGCTCACTTT GTCGAACATG
ATCACTGCGC CTTTGGTGAT GCCTGAGGTG ATCACGGGTC TGTCACTGCT GCTGCTATTT
GTGCATATGG CGGATCTCTT AGGTTGGCCG AAAGAGCGCG GCATGGTGAC AGTATGGATT
GCCCATTCAA CCTTCTGTGC GGCCTATGTG GCTGTGGTGG TGTCGTCAAG ATTGCGTGAG
TTAGACATGT CAATCGAAGA GGCGGCAATG GATTTAGGCG CTACGCCGCT TAAAACCTTC
TTCCTGATCA CTGTGCCCAT GATTTCACCG GCATTAGTGG CGGGCTGGTT GTTATCCTTT
AGTCTGTCAC TCGATGACTT AGTGATCGCA AGCTTTGCCT CAGGCCCAGG TGCAACCACC
TTACCTATGG TGGTGTTTTC CTCGGTGCGC TTGGGGGTAT CGCCTAAGAT CAACGCCTTG
GCAACACTTA TCATTCTATG TGTGTCGTTA ATCGCTTTCT TGTCTTGGTA TATGGCAAGA
CGCGCCGAAA AACGTGAGCG TATGCCGTTG AACTAA
 
Protein sequence
MKKLSFSSVM LWFGLFFLYA PMLILVIYSF NESKLVTVWG GFSPKWYGEL FADQQILDAV 
WTSLRIAFYS STMAVIIGTM AAFVMTRFKR SWAKLTLSNM ITAPLVMPEV ITGLSLLLLF
VHMADLLGWP KERGMVTVWI AHSTFCAAYV AVVVSSRLRE LDMSIEEAAM DLGATPLKTF
FLITVPMISP ALVAGWLLSF SLSLDDLVIA SFASGPGATT LPMVVFSSVR LGVSPKINAL
ATLIILCVSL IAFLSWYMAR RAEKRERMPL N