| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3092 |
|---|
| Symbol | |
|---|
| ID | 4477808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3708956 |
|---|
| End bp | 3710404 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639727696 |
|---|
| Product | succinate semialdehyde dehydrogenase |
|---|
| Protein accession | YP_870722 |
|---|
| Protein GI | 117921530 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.101414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.617954 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTGTTAA AAGACCCGAG TCTGCTGCGT CAGCAATGTT ATATCAATGG TCAGTGGTGC
GATGCGCAGT CAAAAGAAAC TGTCGCTATC GCCAATCCCG CGACGGGCGC GGTGATCGCT
AGTGTTCCTG TGATGGGGCA AGCCGAAACT CAAGCGGCAA TTGCGGCAGC CGAAGCGGCC
TTGCCCGCAT GGCGAGCATT AACCGCAAAA GAGCGTGGTG TCAAGCTGCG TCGTTGGTTT
GAGTTACTCA ATGAAAATAG TGATGATTTA GCGTTAATGA TGACCTCTGA GCAGGGCAAG
CCCCTTGCAG AAGCTAAGGG TGAAGTCACC TACGCCGCCT CTTTTATCGA ATGGTTCGCC
GAAGAGGCGA AGCGCGTCTA TGGCGATACG ATTCCTGGGC ATCAGGGCGA TAAACGTATC
ATGGTGATCA AGCAGCCCGT GGGCGTGACT GCGGCTATTA CCCCTTGGAA CTTCCCTGCT
GCGATGATCA CTCGTAAAGC CGCGCCAGCA CTGGCAGCGG GTTGTACTAT GGTGGTGAAA
CCTGCACCGC AAACGCCTTT TACTGCATTA GCCTTAGCTG TGCTTGCCGA GCGTGCGGGG
ATCCCCGCTG GGGTATTCAG CGTGATCACT GGCGATGCCA TCGGCATTGG TAATGAGATG
TGCAGCAATC CAGTTGTGCG TAAGTTGTCT TTCACCGGCT CGACCCAGGT GGGCATTAAG
TTGATGGAAC AATGCGCGCC GACACTGAAG AAATTATCTT TAGAATTAGG CGGTAACGCG
CCATTTATCG TATTCGACGA TGCCAATATC GATGCGGCGG TCGAAGGCGC GATGATCGCT
AAGTATCGCA ATGCGGGGCA AACCTGCGTC TGCGCTAACC GCATTTATGT TCAGGCGGGC
GTGTATGACG AATTTGCTCG CAAGCTCAGT ATTGCCGTGG GTAAATTAAA GGTGGGTGAG
GGCATTGGCG AGGGCGTAAC TACGGGACCG CTTATCAATT GCGCGGCGGT CGAAAAAGTC
CAGAGCCATC TTGAGGATGC GCTCAGCAAA GGGGCGACTG TGGTTGCGGG CGGTAAGCCC
CATAGCTTAG GTGGCAACTT CTTCGAGCCA ACGGTACTGA CGAATGTCGA TAGCAGTATG
CGCGTTGCCC GTGAAGAAAC CTTTGGCCCA CTGGCGCCGC TGTTTAAGTT TACCGATGTG
GACGATGTGA TTAAGCAAGC CAATGATACC GAGTTTGGAT TAGCGGCTTA TTTTTATGGC
CGTGATATCT CACTCGTGTG GAAAGTGACC GAGGCATTGG AATACGGCAT GGTGGGCGTC
AACACTGGCT TGATTTCCAC CGAAGTCGCG CCGTTTGGCG GAATGAAATC CTCAGGGCTC
GGTCGAGAAG GCTCTAAGTT CGGCATCGAA GAATATTTAG AAATCAAATA TATCTGCATG
TCTGTTTAA
|
|---|
| Protein sequence | MLLKDPSLLR QQCYINGQWC DAQSKETVAI ANPATGAVIA SVPVMGQAET QAAIAAAEAA
LPAWRALTAK ERGVKLRRWF ELLNENSDDL ALMMTSEQGK PLAEAKGEVT YAASFIEWFA
EEAKRVYGDT IPGHQGDKRI MVIKQPVGVT AAITPWNFPA AMITRKAAPA LAAGCTMVVK
PAPQTPFTAL ALAVLAERAG IPAGVFSVIT GDAIGIGNEM CSNPVVRKLS FTGSTQVGIK
LMEQCAPTLK KLSLELGGNA PFIVFDDANI DAAVEGAMIA KYRNAGQTCV CANRIYVQAG
VYDEFARKLS IAVGKLKVGE GIGEGVTTGP LINCAAVEKV QSHLEDALSK GATVVAGGKP
HSLGGNFFEP TVLTNVDSSM RVAREETFGP LAPLFKFTDV DDVIKQANDT EFGLAAYFYG
RDISLVWKVT EALEYGMVGV NTGLISTEVA PFGGMKSSGL GREGSKFGIE EYLEIKYICM
SV
|
|---|
| |