| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3087 |
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| Symbol | |
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| ID | 4477802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 3699560 |
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| End bp | 3701419 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639727690 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_870717 |
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| Protein GI | 117921525 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0259525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0013173 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTCAAGC TGTTGCTTGC CAAAGGTAAA
GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TACCTGCAGA CATGGTCGAT
TCTGACCAGA TCGAAGATAT TATCCAGATG ATAAATGACA TGGGTATTCG GGTGTTCGAA
GAAGCACCAG ATGCCGATGA CATGATGATG TCGGAAGACA ACACAGACGA AGATGCAGCG
GAAGAAGCCG CAGCCGCCCT TGCCACAGTA GAAAGTGAGC TAGGCCGCAC CACAGACCCA
GTGCGTATGT ACATGCGCGA AATGGGTACC GTTGAACTGC TTACCCGTGA AGGCGAAATC
GTTATCGCCA AACGCATCGA AGAAGGCATC AACACAGTTC AAAGCTCTGT CGCCGAATAC
CCACAAGCGA TCGCCATGAT CCTTGAGCAG TACGACCAGT ACGAAGCCGA CGAACTGCGC
CTGTCTGATA TTATCTCTGG ATTTGTTAAC CCGGACGAAG AAGACCTAGG TCCAACCGCG
ACTCATATCG GTTCTGAATT ATCGGAAGAA GATCTCGATG ATGAAGATGA CGATGAAGAC
GACGAAGACG AAGACGGTGA TGGCGAAGGC GATGACGATG GCAACAAGGG ACCCGATCCT
GAAGAAGCGC GTGAACGCTT TAGCCAATTA AGAACCGCCT ACGAAAACGC GCTTAAGATC
ATCGATGCCA AAGGTCGTGA ACACCCAGAA TCGATTCAAG CACTGTTTGA AATCGGCGAG
ATTTTCAAAG AGTTCCGCCT CGTACCTAAG CAATTCGACC GCTTAGTGAA AAGCATGCGT
TCTATGATGG ACCGAGTGCG CGTTCAAGAG CGTCTACTGA TGAAGCTCTG TGTCGAACAG
GCCAAAATGC CGAAGAAGAA CTTTGTTAAA TTCTTCACCG GTAACGAAAC CAATCTCGAT
TGGTTCGATG CAGAAAAGAA CTCAACTAAG CCTTATGCCG AAGGCTTAAG AATGGTTGAA
GAAGACGTTC AGCGTTGCCG TAGCAAGCTG GCCGCCATCG AAGAAGAAAC CGGCTTAGTG
ATTGCCGCCA TTAAAGATAT CAACCGTCGT ATGTCAATCG GTGAAGCCAA GGCTCGCCGT
GCGAAGAAAG AAATGGTTGA AGCAAACTTA CGTCTGGTAA TTTCTATCGC GAAGAAATAC
ACCAACCGTG GTCTGCAATT CTTGGACCTT ATCCAAGAAG GTAACATAGG TCTGATGAAG
GCCGTTGATA AGTTCGAATA CCGTCGTGGT TACAAGTTCT CGACCTATGC GACTTGGTGG
ATCCGTCAGG CTATCACCCG CTCAATCGCG GACCAAGCCC GTACGATCCG TATTCCAGTA
CATATGATCG AAACCATCAA CAAGCTGAAC CGTATCTCTC GTCAAATGCT GCAGGAAATG
GGTCGTGAAC CCTCACCTGA AGAACTGGCA GAGCGTATGA TGATGCCGGA AGATAAGATC
CGTAAGGTAC TGAAAATCGC TAAAGAACCT ATCTCCATGG AAACCCCAAT CGGTGACGAT
GAAGATTCGC ATTTAGGTGA TTTTATCGAG GATACTACCC TCGAATTACC ACTGGACAGC
GCCACCAGCG AAAGCCTGAA GAGCGCCACC CATGAGGTTT TAGCAGGCTT AACAGCCCGT
GAAGCGAAAG TACTGCGTAT GCGTTTTGGT ATCGATATGA ATACCGACCA CACGCTAGAA
GAAGTGGGTA AACAATTTGA CGTAACCCGT GAGCGTATCC GTCAAATCGA GGCGAAAGCC
CTACGTAAAC TGCGCCACCC TTCACGTTCG GAAATCTTAA AGTCGTTCTT AGACGAATAG
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| Protein sequence | MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVFE
EAPDADDMMM SEDNTDEDAA EEAAAALATV ESELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQSSVAEY PQAIAMILEQ YDQYEADELR LSDIISGFVN PDEEDLGPTA
THIGSELSEE DLDDEDDDED DEDEDGDGEG DDDGNKGPDP EEARERFSQL RTAYENALKI
IDAKGREHPE SIQALFEIGE IFKEFRLVPK QFDRLVKSMR SMMDRVRVQE RLLMKLCVEQ
AKMPKKNFVK FFTGNETNLD WFDAEKNSTK PYAEGLRMVE EDVQRCRSKL AAIEEETGLV
IAAIKDINRR MSIGEAKARR AKKEMVEANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK
AVDKFEYRRG YKFSTYATWW IRQAITRSIA DQARTIRIPV HMIETINKLN RISRQMLQEM
GREPSPEELA ERMMMPEDKI RKVLKIAKEP ISMETPIGDD EDSHLGDFIE DTTLELPLDS
ATSESLKSAT HEVLAGLTAR EAKVLRMRFG IDMNTDHTLE EVGKQFDVTR ERIRQIEAKA
LRKLRHPSRS EILKSFLDE
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