Gene Shewana3_3016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3016 
SymbolrimM 
ID4478559 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp3622837 
End bp3623367 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content46% 
IMG OID639727620 
Product16S rRNA-processing protein RimM 
Protein accessionYP_870647 
Protein GI117921455 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000828768 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGTA ACCAACAGCC AGTCGTACTG GGGAAATTAG GCTCCTGTCA TGGCATTAAA 
GGTTGGCTGA AAATCACCGC CTATACCGAT TCTGTTGAAG GTATCTTTGA CTATTCACCT
TGGCTTATTA AAGAAAATGG TGAATGGCGC GAAGTAAAAG TCATTCAGTG GCGTTACCAA
GGTAAGGCGG TTGTCGCCGA GCTTGAAGGT GTCACCACGC GGGAGCGAGC ACAAATGCTC
ACCAATTGCG AAATTGGGAT CCTGCCAGAG CAGATGAACG ATTTGCCAGA AGACGAGTTC
TATTGGCGTG ACCTCATCGG TTGTGAAGTG ATTAATACCA ATGGCTATAA CATGGGTGTT
GTCGATCAAA TCGTGGAAAC CGGTTCGAAC GATGTGCTCT TAGTGAAAGC CAACGCGAAA
GATAGCTTCG GCAAAGTGGA ACGTATGCTT CCCTTTGTCC CAGGGCAATT CATCTTAAAG
GTGGATGTCC AAGGTAAACA GATTTTAGTG GATTGGGATC CTGACTTTTA A
 
Protein sequence
MSSNQQPVVL GKLGSCHGIK GWLKITAYTD SVEGIFDYSP WLIKENGEWR EVKVIQWRYQ 
GKAVVAELEG VTTRERAQML TNCEIGILPE QMNDLPEDEF YWRDLIGCEV INTNGYNMGV
VDQIVETGSN DVLLVKANAK DSFGKVERML PFVPGQFILK VDVQGKQILV DWDPDF