| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3015 |
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| Symbol | trmD |
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| ID | 4478558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 3622075 |
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| End bp | 3622821 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639727619 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_870646 |
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| Protein GI | 117921454 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000199049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTGGTTAG GGGTAATTAC CCTGTTCCCA GAAATGTTTC GTGCCGTAAC AGACTTTGGG
GTTACGGGTC GTGCCGTGAA GAACGGTCTG CTTGAGTTGC ACACGTGGAA TCCTCGCGAT
TTCACCCATG ATAGACACAG TACGGTAGAT GACAGGCCTT ACGGCGGTGG TCCCGGAATG
TTGATGATGG TGCAACCCTT ACGCGATGCC ATCCATGCTG CGAAAGCGGC GGCAGGCGAA
GAGGCAAAGG TGATTTACTT GTCACCTCAA GGACGCAAGC TGGATCAGCA AGGCGTTACT
GAGTTGGCTG AATCATCCCG GTTGATTCTG GTGTGTGGTC GATACGAAGG TATTGATGAA
CGCATCATTC AAACGGAAGT GGATGAAGAA TGGTCGGTTG GGGATTACGT GCTTTCGGGC
GGTGAATTAC CCGCAATGAC CTTGATAGAT GCAGTATCGA GATTGGTTCC TGGCGTGCTA
GGAAAACAAG CTTCGGCGGA GCAAGATTCT TTCTCCGACG GTTTACTGGA CTGTCCTCAT
TACACGCGCC CTGAAAGTCT GGATGGACTC GATGTACCCG CAGTACTGCT AAGTGGCAAC
CACGAACAAA TTAGACTCTG GCGTTTGCAG CAAAGCCTTG GTAGGACTTT TCTAAGACGG
CCAGAATTAT TTGAAAATCT AGCTCTGACT GACGAACAAT CGACTCTTTT AGCGCAGTTC
GTTGAAGCAA TGGACAAGAA TGCTTAG
|
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| Protein sequence | MWLGVITLFP EMFRAVTDFG VTGRAVKNGL LELHTWNPRD FTHDRHSTVD DRPYGGGPGM
LMMVQPLRDA IHAAKAAAGE EAKVIYLSPQ GRKLDQQGVT ELAESSRLIL VCGRYEGIDE
RIIQTEVDEE WSVGDYVLSG GELPAMTLID AVSRLVPGVL GKQASAEQDS FSDGLLDCPH
YTRPESLDGL DVPAVLLSGN HEQIRLWRLQ QSLGRTFLRR PELFENLALT DEQSTLLAQF
VEAMDKNA
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