Gene Shewana3_2995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2995 
Symbol 
ID4478538 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp3600412 
End bp3600972 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content52% 
IMG OID639727599 
ProductPfpI family intracellular peptidase 
Protein accessionYP_870626 
Protein GI117921434 
COG category[R] General function prediction only 
COG ID[COG0693] Putative intracellular protease/amidase 
TIGRFAM ID[TIGR01382] intracellular protease, PfpI family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAGTA TTTTGATCAT CGCCGGTGAT TTTGTTGAAG ATTATGAGCT AATGGTACCG 
TTCCAAGCCC TACAAATGGT GGGGCACAGC GTAACGGTTG TCTGCCCTGA TAAAGTGGCG
GGACAAACCA TTAAAACGGC TATCCATGAC TTTGAAGGCG ATCAAACCTA TACCGAAAAA
CCAGGACACT TATTTGCCCT AAATGGCAAC TTTGCCGGTA CCAACGCCAG TGATTTTGAT
GCGCTGCTGC TTCCCGGTGG CCGTGCGCCT GAGTATTTAC GCCTAAATCC TGCGGTGATC
GCCTTGGTGA TGGACTTTGC TGCCCAAGAT AAACCCATAG CGGCGATTTG CCATGGCGCG
CAGTTACTGA CGGCGGCCGA TGTGGTACGC GGTAAGAAAG TGTCTGCCTA TCCAGCTTGT
GCGCCTGAGG TGAAACAAGC GGGCGCCGAG TATTGCGAGA TTGAGGTGAC GGCGGCAATC
ACCGATGGCA AGTTAGTCAC GGCGCCCGCC TGGCCAGCGC ATCCTGCATG GTTGGCGCAG
TTTAACAAGT TATTGAATTA A
 
Protein sequence
MASILIIAGD FVEDYELMVP FQALQMVGHS VTVVCPDKVA GQTIKTAIHD FEGDQTYTEK 
PGHLFALNGN FAGTNASDFD ALLLPGGRAP EYLRLNPAVI ALVMDFAAQD KPIAAICHGA
QLLTAADVVR GKKVSAYPAC APEVKQAGAE YCEIEVTAAI TDGKLVTAPA WPAHPAWLAQ
FNKLLN