| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2963 |
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| Symbol | hsdR |
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| ID | 4478171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 3558640 |
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| End bp | 3562143 |
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| Gene Length | 3504 bp |
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| Protein Length | 1167 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 639727568 |
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| Product | type I restriction enzyme EcoKI subunit R |
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| Protein accession | YP_870595 |
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| Protein GI | 117921403 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATCCT CTAGTGAACC CTCAAATTTT GGTTTTCTTG TCGAACATGA CCAACTGTTT
GTGGATTTGG CCAATTCGGC AGAACGTGCC TTTTCTAGTG ATCCTAATAC CACTCTACTC
AAACTGCGTC AGCTAGGCGA AGCTATGGCG CAACATATTG CTGTGCTCGC CGGTATTGAA
TTTGATGAGC AAACAAAGCA GACCGATTTG TTATATCGCA TTAACCGCGA TCTCAAACTC
GAGCCTATGG TTCGTGAGCT TTTTCATACG CTACGTGTTG AAGGCAATAT CGCCAATCAT
CAATTTCGCA CTAAGCATAA AGAGGCTATC AATGGGCTGG TAGTCGCCAG AAAACTTGCG
ATTTGGTTTC ATCAGACCTT CAGCAAAAGT GGCACAGCCT TTAAGCCCGG TCCATTTATT
CCGCCTAAAG ATCCAAGTGC TGAACTATTT ACGCTACAAG CTGAAATTGA AGGTCTTAAA
GCTCAACTTC AAAACGCAAA CGTGGAGCTG GATTCTAGCC AGCAGCTAAA TGAGCTAATC
AAGCAAGAAA AAGACGAATA TGAAGCATTG GCTTTGGCAA TGGATCAAGA ATCCAAAGCC
CTAGCACTAC AAGCAGCTCA GCATGAGCAA GAACTTGAGC GTGTAAAGCA AGATTACGAA
GCAAAGTTAA AAGCCATTCA GCAGCACGCT AAGCAGCAGG ACGATAAAGC GCAACGTAGT
CAATTAAGTA AGTTAAGCCG TAAAGCTTTC CAAGCCAGTA AAGCCATTGT TGTCGATGAA
CAACTTACGC GAATTTTGAT AGATCAGCAG CTAAATGAAG CTGGTTGGAC CGCGGATACG
CAAACAATAA GGTATTCCAG TAATTCTCGT CCTGAGAAAG GCAAATATAA AGCGATTGCG
GAGTGGCCAA CGTCAACGGG TAATGCGGAT TATGTATTGT TTGCAGGTCT AACACCTATC
GTAGTAGTTG AAGCCAAGAG AGAAAACATC AATGTCGCAG GTAAAATATC CCAAGCGGAA
AGATATAGCC GCAGCATAAA AATAAAGGGT GAGTGTGATT GGGCTTGGGA AGTTGCGGGG
AGAACCGTTG CTTGGCCTGA TGAACAAGAA TCGCATTATA AGGTGCCGTT TGTGTACTCC
TGTAATGGCC GCCCTTATGT ACCTCAACTC GCTGAGCAAT CAGGCACTTG GTTTAGGGAT
GTCAGAGACC CAAGTAATTT AAAGCGAGCC TTGCCTTCAT TTCATACTCC GACAGGGTTG
CTTGACCTGC TCAACAGAAG TAAAGAAGAG GCGCAAGTTA AGTTGCAGCA GGAACCTTTT
GGGTATCTCA AATTACGCGA CTACCAAATT AAGGCAATTG AAGCCGTTGA ATCAGTACTT
AGTCAAAATG TGCGTTCTGC GCTGCTAGCG ATGGCAACCG GTACCGGTAA AACCCGTACC
ATCATCGGTT TAATTTATCG TTTTTTAAAA GCGGAGCGCT TCAAACGGGT GCTATTTTTG
GTTGACCGTT TTGCACTTGG CGATCAAGCA CAAAATGATT TTAAAGAGGT TTCGTTAGAA
CAAAACTTAT CACTTTCTGG CATTTATAAC ATTGCTGAAT TAGGTGATAT GGCCGCCGAG
GCGGAAACTC GAATTCAAGT ATCAACCGTG CAGGCTATGG TGAAACGTGT CTTTATGAGC
GATAACCCAC CTCCGTTAGA TCAGTTTGAT TGCATCATTG TAGACGAAGC GCACCGTGGA
TATACGCTCG ACCAAGAAAT GACCGAAGGC GAAATAGCAA CACGTGATGC CGCTCAGTAC
CTGTCAAGCT ATCGTCGTGT TTTAGACTAT TTTGATGCCG TTAAAATTGC ACTTACTGCC
ACGCCCGCTA AGCATACCTC CGAGATTTTT GGCAAACCGG TATATACCTA TTCATACCGA
GAAGCGGTCG CCGAAGACTG GCTTATCGAT CATGAGCCGC CAATTCGATA TGAGACATTG
CTAACGCAAA ATGGCATTTC ATTCACTAAG GGTGAAACCG TTAGTGCCAT CAATACCCAA
ACCGGTGAGA TTGAATCCGC AGAGCTTGAA GATGAACTGA ATTTTGAGGT GGAAGCCTTC
AACCGGTGCG TGATTAATGA AAACTTCAAC AAAGTCATTT GCGAGCAATT GGTTCAAGAA
TTAGACCCAT TCGGCGATGA AAAAACGCTG ATTTTCTGTG CCACAGACCT GCACGCGGAC
ATGGTCAAAC GCTTGCTAGA TGATGCGTTT AAAGCCATTT ATAACGGTGA ATACAATCAA
GCGGCAGTGG CCAAAATCAC AGGGCAAAGC GACAAAGTTA ACCAGCTCAT CAAACAATAC
AAAAACGAGC GCTACCCCAA TATCGCTATC ACTGTTGATT TGCTGACGAC GGGGATCGAT
GTCCCCAAAA TCTGCAATTT GGTCTTTATG CGCCGTGTCA AATCGCGCAT TTTGTATGAG
CAGATGATAG GACGCGCCAC GCGCCGTTGT GATGATATCG GTAAAACGGT ATTTCGCATC
TACGACCCTG TTGATATTTA CGCAGCTTTA AGTGACGTCA ACACCATGAA CCCCTTGGTG
AAAGACCCGA ATGTCACTAT TGAACAATTG ATTGATGAAC TCTCAGACCC TGAATCATTG
GAACGAGCGT TAAACGCTCC CGGCGAGCAA CAAGGTGAAA CGCAGGCCGA CGTAGTATTA
ACTCAGCTTG GCCAAAAAGT GATGCGCATC CTCCGTAAGG CAGCAAAGAA AGCCGAAGCC
AAACCCGAGT TAAAACAGAA ACTGGATGAA CTTCAGGACT TATGGGGAGT TGAGCCTAAG
AACTTGCATA CCCATTTACG CCAATTAGGG CCTAAAGATG CTTCGGTGTT CATCAATCAA
CATGCAGGCT TACTCAAACA ACTTGCTGAG GTGAACAGCT TACTTGGCAG CGAATATCAA
CCCATTATCT CCGAGCATGA GGATGAACTT AGAGAGCGCA CTCAAAGCTA CGGTACGCAT
CAGCGGCCAG AGGATTATCT GCAAGGCTTT GAGCATTTTA TTCGTGAGCA GATTAACCAA
AGCGCTGCGT TGGCAGTAGT CGTTAATCGT CCTCGGGATT TAACCCGCGG GCAGCTAAAA
GAGATCAAGT TACTGCTCGA TGCCGCGGGT TACACAGAGG CTAGCTTGCA GACAGCGGTG
CGTAATCAAA CTAACCAAGA GATAGCCGCC AGTATCATCG GCCATATTCG TCGTGCGGCA
ATGGGCGAAG CGCTAATCCC ATTTGAGCAA CGTGTCGCCA AAGCTATGGA ATACATTTAT
GCCTCACATC CATGGACGCC AGTACAGCGA AAATGGTTAG AAAAGCTCGC TAAACAGCTT
AAAAACGAAG TCGTGCTGGA TCAGCAATTT ATCAATCAAC GCTTCCGTGA TGATGGTGGT
GTGAAAGGGG TCAATAACCG CTTAGGCAAT CACTTAGATG AAGTATTGGA TGAGTTAAAG
CAGCATTTAT GGGAAGCAAG TTAA
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| Protein sequence | MASSSEPSNF GFLVEHDQLF VDLANSAERA FSSDPNTTLL KLRQLGEAMA QHIAVLAGIE
FDEQTKQTDL LYRINRDLKL EPMVRELFHT LRVEGNIANH QFRTKHKEAI NGLVVARKLA
IWFHQTFSKS GTAFKPGPFI PPKDPSAELF TLQAEIEGLK AQLQNANVEL DSSQQLNELI
KQEKDEYEAL ALAMDQESKA LALQAAQHEQ ELERVKQDYE AKLKAIQQHA KQQDDKAQRS
QLSKLSRKAF QASKAIVVDE QLTRILIDQQ LNEAGWTADT QTIRYSSNSR PEKGKYKAIA
EWPTSTGNAD YVLFAGLTPI VVVEAKRENI NVAGKISQAE RYSRSIKIKG ECDWAWEVAG
RTVAWPDEQE SHYKVPFVYS CNGRPYVPQL AEQSGTWFRD VRDPSNLKRA LPSFHTPTGL
LDLLNRSKEE AQVKLQQEPF GYLKLRDYQI KAIEAVESVL SQNVRSALLA MATGTGKTRT
IIGLIYRFLK AERFKRVLFL VDRFALGDQA QNDFKEVSLE QNLSLSGIYN IAELGDMAAE
AETRIQVSTV QAMVKRVFMS DNPPPLDQFD CIIVDEAHRG YTLDQEMTEG EIATRDAAQY
LSSYRRVLDY FDAVKIALTA TPAKHTSEIF GKPVYTYSYR EAVAEDWLID HEPPIRYETL
LTQNGISFTK GETVSAINTQ TGEIESAELE DELNFEVEAF NRCVINENFN KVICEQLVQE
LDPFGDEKTL IFCATDLHAD MVKRLLDDAF KAIYNGEYNQ AAVAKITGQS DKVNQLIKQY
KNERYPNIAI TVDLLTTGID VPKICNLVFM RRVKSRILYE QMIGRATRRC DDIGKTVFRI
YDPVDIYAAL SDVNTMNPLV KDPNVTIEQL IDELSDPESL ERALNAPGEQ QGETQADVVL
TQLGQKVMRI LRKAAKKAEA KPELKQKLDE LQDLWGVEPK NLHTHLRQLG PKDASVFINQ
HAGLLKQLAE VNSLLGSEYQ PIISEHEDEL RERTQSYGTH QRPEDYLQGF EHFIREQINQ
SAALAVVVNR PRDLTRGQLK EIKLLLDAAG YTEASLQTAV RNQTNQEIAA SIIGHIRRAA
MGEALIPFEQ RVAKAMEYIY ASHPWTPVQR KWLEKLAKQL KNEVVLDQQF INQRFRDDGG
VKGVNNRLGN HLDEVLDELK QHLWEAS
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