| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2901 |
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| Symbol | |
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| ID | 4479433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 3469970 |
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| End bp | 3471838 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639727507 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_870534 |
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| Protein GI | 117921342 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00195548 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00304381 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTTTGG ACATTTCACA GTTTCCCGTG TTGGCTCAGG CCAACACTCC TAATGAACTC
CGCCAGCTTC CTCAGGCCCT GTTACCTCAA TTGGCCGATG AGTTGCGGGA GTTTCTTCTT
AAGTCCGTTG GCATGTCCAG CGGACATTTT GCCTCTGGAC TTGGCACGGT CGAACTGACT
GTCGCCCTGC ATTATGTCTA TAACACCCCG TTTGATCGTT TGATTTGGGA CGTTGGCCAC
CAAGCCTATC CCCATAAAAT TCTCACCGGT CGCCGCGACA GAATGCACAC CATTAGGCAA
AAGAACGGCT TACACCCTTT CCCTTGGCGG GAAGAAAGTG AATACGACAC CTTTAGCGTC
GGACACTCCG GTACATCCAT CAGTGCCGCA TTAGCCATGG CCGTTGCCGC CGAAAAAGAA
CAGGCTGGCC GCAAAGTGGT TGCCGTGATT GGCGATGGCG CCATGACGGG CGGTATGGTG
TTCGAGGCCA TGAATCACGC GGGTGATTTG CACAACGATA TGCTGATGGT GCTGAACGAT
AACGAAATGT CGATTTCAGA AAACGTCGGC GCGCTCAACA ATCACCTAGC GCAACTGATG
TCGGGCCGCC TCTACACCAC CATTCGTGAA AGCAGCAAGA AAGTCCTCAA GGGCATGCCG
GTCATCAAAG AGATGGCCAA GCGCACCGAA GAGCACCTCA AGGGCATGGT TGTACCTGGC
ACTCTGTTTG AAGAGCTAGG CTTTAACTAT ATCGGCCCCA TCGATGGCCA CGATGTCGAT
GCCTTAGTGG AAACCCTGCG CAATATGCGC TCTCTAAAGG GCCCACAAGT GCTGCACATC
ATGACCAAAA AAGGTCGTGG CTATGAACCG GCCGAGAAAG ATCCTATCGG TTGGCACGCA
GTACCTAAAT TTGACCCATC ACAGTTTAAG AAGCCAGCGA CTAAGCCGGG ACTGCCAACC
TTCTCCCAAG TGTTTGGCAA ATGGTTATGT GATATTGCCG AGCAGGATGA AAAAGTCTTA
GGCATTACCC CAGCCATGCG TGAAGGTTCG GGCATGGTGG AGTTCTCACA ACGCTTCCCG
AAACAATATT TCGATGCCGC CATTGCCGAG CAACATGCGG TGACCTTAGG GGCCGGATTT
GCCTGTGAAG GCTTTAAGCC TGTGGTCGCC ATTTACTCGA CCTTCCTGCA ACGGGGCTAT
GACCAGCTAA TCCACGATGT GGCACTACAA CGTTTACCGG TATTGTTCGC CATTGACCGT
GGCGGTATCG TCGGTGCCGA CGGCCCAACC CACCAAGGAG CATTCGATTT AAGCTTTATG
CGCTGCATTC CGAATATGGT GATCATGGCG CCATCGGATG AAAATGAATG TCGCCAAATG
CTCTATACAG GTTATTGCTA TGATGCAGGC CCGAGCGCGG TGCGTTATCC AAGGGGAAGC
GCCACAGGCG CGACTCAGGT AGAAGCCATG ACGGCGCTGC CAATTGGTAA AGGCGTGATT
AAGCGTTTAG GCAAAGGTAT CGCCATGCTG AACTTTGGCA CCACCTTAGC CGCCGCCTTA
ACCGCCGCAG AAAGCTTAGA CGCCACCGTC GTCGATATGC GCTTTGTGAA GCCGTTAGAT
GTGGATTTAG TCAAAGAGAT GGCGCAAACC CACGATGTGC TCGTCACAGT GGAAGAAAAC
GCCATTATGG GCGGCGCTGG CTCTGGTGTA TTAGAACTGC TGCAAAAGCT TAAAATGCCG
AAACCTGTGC TGCAAATAGG CCTACCCGAT GAGTTTATTA AACATGGCTC TCCAGAAGAA
GTGACCCATG ATTTACAACT CGATGCCGAA GGTATGTTAG CGCAAATTAA TGCCTTTCTT
GCCGATTAA
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| Protein sequence | MSLDISQFPV LAQANTPNEL RQLPQALLPQ LADELREFLL KSVGMSSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDRMHTIRQ KNGLHPFPWR EESEYDTFSV
GHSGTSISAA LAMAVAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLMVLND
NEMSISENVG ALNNHLAQLM SGRLYTTIRE SSKKVLKGMP VIKEMAKRTE EHLKGMVVPG
TLFEELGFNY IGPIDGHDVD ALVETLRNMR SLKGPQVLHI MTKKGRGYEP AEKDPIGWHA
VPKFDPSQFK KPATKPGLPT FSQVFGKWLC DIAEQDEKVL GITPAMREGS GMVEFSQRFP
KQYFDAAIAE QHAVTLGAGF ACEGFKPVVA IYSTFLQRGY DQLIHDVALQ RLPVLFAIDR
GGIVGADGPT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYCYDAG PSAVRYPRGS
ATGATQVEAM TALPIGKGVI KRLGKGIAML NFGTTLAAAL TAAESLDATV VDMRFVKPLD
VDLVKEMAQT HDVLVTVEEN AIMGGAGSGV LELLQKLKMP KPVLQIGLPD EFIKHGSPEE
VTHDLQLDAE GMLAQINAFL AD
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