| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2900 |
|---|
| Symbol | |
|---|
| ID | 4479432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 3469067 |
|---|
| End bp | 3469948 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639727506 |
|---|
| Product | farnesyl-diphosphate synthase |
|---|
| Protein accession | YP_870533 |
|---|
| Protein GI | 117921341 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0370775 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000852283 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTTAGTCA ATGCAATAAA AGAATATCAA CTACGGGTTG ATGACCAATT AAAACAACGT
TTCAGCACAC TCGAAGACAC TGCGCCGCAG TTAAAGGCCG CCATGACCCA CGGCGCGCTA
TTAGGCGGTA AGCGTATTCG TCCCTTCTTG GTTTACAGCG TGGGGCAAAT GTTTGGCGTG
CCGCTTGAAA AGCTCGACGC CAGCGCCGCC GCCATTGAGT GTATTCATGC TTATTCGTTA
ATCCATGACG ATTTACCCGC CATGGACGAT GACGACCTTC GTCGTGGTCA GCCCACAGTG
CATATCGCCT TCGATGAGGC GACCGCCATC CTTGCTGGGG ATGCACTGCA AACCTTAGCC
TTTGAAATTG TGACCGAAGC CGTACCTGGG ATCAGCAGCG AGCAACATAT CGCTATGGTG
AGGGCGCTGG CGAAAGCCTC GGGTTACCGT GGTATGTGTG GCGGCCAAGC GATTGACTTA
GCCTCAACCG ATAAGCTCAT CGACCTTAAA GCCTTAACTC AACTGCATAA TATGAAAACG
GGCGCCCTTA TCAGCTGCGC CGTTGAGTTA GCCCTGATCG CCGCTAATGC GCCAAAAGAT
GAATATCAGA CTATGATGGA ATTTGCCCAT GCGGTAGGAC TTGCCTTCCA AGTGCAAGAC
GATATTCTGG ACATCATTGC CACCACGGAA GAACTCGGCA AACCCCAAGG CTCTGACGCC
GAGTCCAATA AGAGTACTTT TCCGCAACTA CTTGGACTGC AAGGCGCCAA AGATACCGCC
GCGCAACTGA TCCAAGAGGC ACTATCAGCG CTGGCTAAAT TGCCATACAA TAGCCAGTTA
ATCGCAGACT TCGCCCGCTA TATCATTGAG CGAAGAATAT AA
|
|---|
| Protein sequence | MLVNAIKEYQ LRVDDQLKQR FSTLEDTAPQ LKAAMTHGAL LGGKRIRPFL VYSVGQMFGV
PLEKLDASAA AIECIHAYSL IHDDLPAMDD DDLRRGQPTV HIAFDEATAI LAGDALQTLA
FEIVTEAVPG ISSEQHIAMV RALAKASGYR GMCGGQAIDL ASTDKLIDLK ALTQLHNMKT
GALISCAVEL ALIAANAPKD EYQTMMEFAH AVGLAFQVQD DILDIIATTE ELGKPQGSDA
ESNKSTFPQL LGLQGAKDTA AQLIQEALSA LAKLPYNSQL IADFARYIIE RRI
|
|---|
| |