Gene Shewana3_2824 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2824 
Symbol 
ID4479812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp3373305 
End bp3374159 
Gene Length855 bp 
Protein Length284 aa 
Translation table11 
GC content49% 
IMG OID639727430 
ProducttRNA pseudouridine synthase C 
Protein accessionYP_870457 
Protein GI117921265 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTAG ATGATGATTG GCTGGATATG CCAGAGGATA AATTCAACCC AACCGAGAGC 
GACGAACAGT CAGAGCCTGC GCCTGAACTG CGTGTTTTGT ATCAAGACGA GCACTTGGTG
GCTATCCATA AACCCGCGGG ATTATTGGTT CATCGCAGCT ACTTAGCACG GCGTGAACGC
TTTTTTGCGA TGCAACTGAC TCGTGACTTG GTCGGTTGCC ATGTGTTTCC GGTACACCGT
TTAGATAGAC CGACCTCGGG CGTGTTGTTA TTTGCCAAAA GCAGTGAGGT GGCCAATGCC
CTATGTGAGC AATTTGCCAA CCACAGTATT GAAAAACAAT ATTTGGCACT GGTGCGTGGC
AATATGCACG AGAGTGGTGT GTTGGATTAT GCGCTCAAAG TCGAATTGGA TGAGGTGGCT
GACAAGTTTG CCAATCAAGA TAAGGCCGCG CAGGACGCTG TGACTCAATA TGAGCCGCTA
TTAAATACCG AAATTCCTTA TCCGTCGGGG CGTTACGCTA CCAGCCGTTT CGCGTTAGTG
AAACTGAGTC CAAAAACGGG GCGTAAGCAT CAACTCAGAC GCCATATGGC GCATTTACGT
CACCCGATTA TTGGCGATAC CACGCACGGA GATGGTAAGC AAAATGCGTT TTTCCGTACG
CATTTCGATA TCAATCGATT GTGGCTGATT GCGAAGAAGT TAACCTTCAC TCACCCAGTT
ACCCAAGCGC GACTGAGTAT CGAAACCGAG CTTGAGCCAG AATGGGAAAC CGTGTTTTCA
GGACTGGGCT GGGATGATGC CGCCCTTTGT TGCGAGCCAA GTGTGTTGAT TGCAGAGCAA
ACGACGACCG TTTAA
 
Protein sequence
MNLDDDWLDM PEDKFNPTES DEQSEPAPEL RVLYQDEHLV AIHKPAGLLV HRSYLARRER 
FFAMQLTRDL VGCHVFPVHR LDRPTSGVLL FAKSSEVANA LCEQFANHSI EKQYLALVRG
NMHESGVLDY ALKVELDEVA DKFANQDKAA QDAVTQYEPL LNTEIPYPSG RYATSRFALV
KLSPKTGRKH QLRRHMAHLR HPIIGDTTHG DGKQNAFFRT HFDINRLWLI AKKLTFTHPV
TQARLSIETE LEPEWETVFS GLGWDDAALC CEPSVLIAEQ TTTV