Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2824 |
Symbol | |
ID | 4479812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 3373305 |
End bp | 3374159 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639727430 |
Product | tRNA pseudouridine synthase C |
Protein accession | YP_870457 |
Protein GI | 117921265 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTAG ATGATGATTG GCTGGATATG CCAGAGGATA AATTCAACCC AACCGAGAGC GACGAACAGT CAGAGCCTGC GCCTGAACTG CGTGTTTTGT ATCAAGACGA GCACTTGGTG GCTATCCATA AACCCGCGGG ATTATTGGTT CATCGCAGCT ACTTAGCACG GCGTGAACGC TTTTTTGCGA TGCAACTGAC TCGTGACTTG GTCGGTTGCC ATGTGTTTCC GGTACACCGT TTAGATAGAC CGACCTCGGG CGTGTTGTTA TTTGCCAAAA GCAGTGAGGT GGCCAATGCC CTATGTGAGC AATTTGCCAA CCACAGTATT GAAAAACAAT ATTTGGCACT GGTGCGTGGC AATATGCACG AGAGTGGTGT GTTGGATTAT GCGCTCAAAG TCGAATTGGA TGAGGTGGCT GACAAGTTTG CCAATCAAGA TAAGGCCGCG CAGGACGCTG TGACTCAATA TGAGCCGCTA TTAAATACCG AAATTCCTTA TCCGTCGGGG CGTTACGCTA CCAGCCGTTT CGCGTTAGTG AAACTGAGTC CAAAAACGGG GCGTAAGCAT CAACTCAGAC GCCATATGGC GCATTTACGT CACCCGATTA TTGGCGATAC CACGCACGGA GATGGTAAGC AAAATGCGTT TTTCCGTACG CATTTCGATA TCAATCGATT GTGGCTGATT GCGAAGAAGT TAACCTTCAC TCACCCAGTT ACCCAAGCGC GACTGAGTAT CGAAACCGAG CTTGAGCCAG AATGGGAAAC CGTGTTTTCA GGACTGGGCT GGGATGATGC CGCCCTTTGT TGCGAGCCAA GTGTGTTGAT TGCAGAGCAA ACGACGACCG TTTAA
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Protein sequence | MNLDDDWLDM PEDKFNPTES DEQSEPAPEL RVLYQDEHLV AIHKPAGLLV HRSYLARRER FFAMQLTRDL VGCHVFPVHR LDRPTSGVLL FAKSSEVANA LCEQFANHSI EKQYLALVRG NMHESGVLDY ALKVELDEVA DKFANQDKAA QDAVTQYEPL LNTEIPYPSG RYATSRFALV KLSPKTGRKH QLRRHMAHLR HPIIGDTTHG DGKQNAFFRT HFDINRLWLI AKKLTFTHPV TQARLSIETE LEPEWETVFS GLGWDDAALC CEPSVLIAEQ TTTV
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