Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2719 |
Symbol | |
ID | 4479123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 3249328 |
End bp | 3251304 |
Gene Length | 1977 bp |
Protein Length | 658 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639727325 |
Product | choline/carnitine/betaine transporter |
Protein accession | YP_870352 |
Protein GI | 117921160 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTATCA AGTCGAGTAT TAATCCACCG GTTTTTTATT CGTCGGTCTT TTTTATCACC TTAATGGTGA TGATCTGCGC CATTTGGCCT ACCGAGGCCA ATCACTTTTT CAAATCCATG CAGTCTTGGC TAGAAGCGAA AGCAGGCTGG TTATATATCC TTGGCGTGGC GATTTTTCTG ATTTTTATCA TCTTTGTCAT GGTCAGTCGC TTTGGCGATA TTAAGCTTGG CCCCGACCAT GCTGTGCCCG ATTATAGCTA TAAGAGCTGG ATTGCCATGC TGTTTTCGGC GGGGATGGGG ATTGGATTGA TGTTCTTCGG CGTTGCCGAA CCTGTGATGC ATTACTTAGC GCCGCCCGAT GCAACGCCTG AGAGTTTGGC CGCCGCCAAA GAAGCGATGA AGATTACGTT CTTCCATTGG GGCATACATG CATGGGCGAT TTACGGGGTG GTTGCCCTGA GTTTGGCCTA TTTTGCCTAT CGGCATAAGC TGCCACTGTT ACCCCGCAGC GCACTCTATC CCTTAATCGG TGAGCGTATT CATGGTCCGA TTGGCCACTG CGTCGATACC TTTGCGGTAT TGGGGACAAT GTTTGGGGTC GCGACTTCCC TAGGGTTTGG AGTATTGCAG GTTAACTCGG GCCTAAGCTA TTTATTCGAG CAACTGCCGA ATAACACCAC TGTGCAAGTG TCGCTGATTA TTGGCATTAC CTTACTCGCC ACTCTGTCGG TATTTTCGGG GCTCGATAAA GGAGTGAAGC GCTTAAGTGA GCTTAACTTA GGCTTGGCCC TTATCCTGTT GCTGATTGTG CTAATCCTTG GCCCAACGGT GATGTTGCTG CAGGCCTTTG TGCAAAATAC CGGCAGTTAT CTCAGTGATA TCGTTAATAA AACCTTTAAT CTGTACGCCT ATCAGCATAA GGAAGATTGG CTTGGCGGTT GGACGCTACT CTACTGGGGC TGGTGGATCT CTTGGTCACC TTTTGTCGGC ACCTTTATTG CGCGGGTGAG TCGCGGCCGT ACCATACGTG AGTTCTTAGT CGGCATTTTA TTTGTGCCTT CGGCGCTGAC CTTTTTATGG ATGACGGTAT TTGGTAACTC GGCCATCGAC GCCATTATGA ATCAAGGCGC GACCTACCTG AGCGAAGCGG TGAATACCAA TGTGCCCGTG GCTCTGTTTG TGTTTTTTGA ACATATGCCG TTCCCGCATC TGTTATCGGG CATTGGGATT TGTTTAGTGG TGACCTTTTT TGTGACCTCA TCAGACTCGG GATCCTTAGT AATCGACAAC CTGACCTCGG GGGGCGATAA CAATGCGCCT GTCTGGCAAC GGGTGTTTTG GGCATTGCTG CAGGGCGTGG TGGCCTCGGT ATTGCTGCTT GCGGGGGGGT TACAGGCGCT CCAAACCGCC GCTATTGCCA GTGCGATGCC ATTTTTATGT GTGATGCTGC TGATGTGTTT AGGGCTGTAT AAGGCGCTGA AGGATGATTG GCTGAAAATC AACAGCGTGC AGCTCCATAC CACCAGTGTG CAATATGCTA AGACCAATAT CAGTTGGGAG GAGCGTATCG AAGTCTTAGT GTCGCATCCC ACCGAAGATG AGGCGCGTAT CTTCCTCAAT AATGTCGCGA CACCGGCGTT ATCTAAGGTG TGTCAGCAAT TTATGAGCAA GGGCCTGACG GCGGATCTTG AGTATCTCGA CGGCAAAGTG CGATTGGTGA TCAGTAACGA AGCCTATCAA CCCTTCGTAT ACGGTGTGCG GATGCGCTGC TTTGAAATCG TTAATCCCGT CGGCGAAGAG TTAGAGCAAG GCAACAATTG GTATTATCGC GCCGAAGTGT ACTTAGAGCA GGGCGGCCAG CACTATGACG TGATGGGCTA TACCGAAGAG CAGTTATTGG CGGATGTGGT CACTCAATAC GAGAAATACC TGCATTATTT GCACTTGTCC AATGCCGACC AAGGACATGT CGCCTAA
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Protein sequence | MSIKSSINPP VFYSSVFFIT LMVMICAIWP TEANHFFKSM QSWLEAKAGW LYILGVAIFL IFIIFVMVSR FGDIKLGPDH AVPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHYLAPPD ATPESLAAAK EAMKITFFHW GIHAWAIYGV VALSLAYFAY RHKLPLLPRS ALYPLIGERI HGPIGHCVDT FAVLGTMFGV ATSLGFGVLQ VNSGLSYLFE QLPNNTTVQV SLIIGITLLA TLSVFSGLDK GVKRLSELNL GLALILLLIV LILGPTVMLL QAFVQNTGSY LSDIVNKTFN LYAYQHKEDW LGGWTLLYWG WWISWSPFVG TFIARVSRGR TIREFLVGIL FVPSALTFLW MTVFGNSAID AIMNQGATYL SEAVNTNVPV ALFVFFEHMP FPHLLSGIGI CLVVTFFVTS SDSGSLVIDN LTSGGDNNAP VWQRVFWALL QGVVASVLLL AGGLQALQTA AIASAMPFLC VMLLMCLGLY KALKDDWLKI NSVQLHTTSV QYAKTNISWE ERIEVLVSHP TEDEARIFLN NVATPALSKV CQQFMSKGLT ADLEYLDGKV RLVISNEAYQ PFVYGVRMRC FEIVNPVGEE LEQGNNWYYR AEVYLEQGGQ HYDVMGYTEE QLLADVVTQY EKYLHYLHLS NADQGHVA
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